Access public ontologies¶
This docs section shows how to access public biological ontologies.
For managing in-house ontologies, see docs:bio-registries.
You’ll need a lamindb instance with the bionty
schema module mounted.
# pip install lamindb
lamin init --storage ./test-ontologies --modules bionty
The guides cover the following entities.
Disease - Mondo, Human Disease, ICD
Phenotype - Human Phenotype, Phecodes, PATO, Mammalian Phenotype, Zebrafish Phenotype
DevelopmentalStage - Human Developmental Stages, Mouse Developmental Stages
You can see all supported ontology versions here.