##### Access public ontologies

This docs section shows how to access public biological ontologies.

For managing in-house ontologies, see *docs:bio-registries*.

You'll need a lamindb instance with the "bionty" schema module
mounted.

 # pip install lamindb
 lamin init --storage ./test-ontologies --modules bionty

The guides cover the following entities.

* Gene - Ensembl, NCBI Gene

* Protein - Uniprot

* Organism - Ensembl Species. NCBI Taxonomy

* CellLine - Cell Line Ontology

* CellType - Cell Ontology

* CellMarker - CellMarker

* Tissue - Uberon

* Disease - Mondo, Human Disease, ICD

* Phenotype - Human Phenotype, Phecodes, PATO, Mammalian Phenotype,
  Zebrafish Phenotype

* Pathway - Gene Ontology, Pathway Ontology

* ExperimentalFactor - Experimental Factor Ontology

* DevelopmentalStage - Human Developmental Stages, Mouse Developmental
  Stages

* Ethnicity - Human Ancestry Ontology

You can see all supported ontology versions here.