Integrations

Data storage

Read & write:

• Local file systems

• AWS S3

• S3-compatible storage services, e.g., MinIO & Cloudflare R2

• Google Cloud Storage

Read only:

• http/https: ln.Artifact("https://some-site.com/some.data")

• HuggingFace: ln.Artifact("hf://datasets/org/repo/data")

Schema modules

• bionty: Basic biological entities, with easy import from >20 public ontologies

• wetlab: Basic wetlab entities

• clinicore: Basic clinical entities

• omop: OMOP Common Data Model

Git

Sync tracked scripts in lamindb with git commits: guide

ML Ops & frameworks

• Weights & Biases

• MLflow

• Hugging Face paths are supported: ln.Artifact("hf://datasets/laminlabs/repo/sharded_parquet")

• scVI

Workflow managers

• redun

• Nextflow

• Snakemake

Array stores

• tiledbsoma: inhouse guide or cellxgene

• DuckDB

Visualization tools

• Vitessce

ELN systems

• Sync schema and data from your Benchling registries within our team/enterprise plan. Reach out to learn more!