bionty.Organism

class bionty.Organism(name: str, taxon_id: str | None, scientific_name: str | None)

Bases: BioRecord, TracksRun, TracksUpdates

Organism - NCBI Taxonomy, Ensembl Organism.

Notes

For more info, see tutorials Manage biological registries and Organism.

Examples

>>> record = bionty.Organism.from_public(name="rabbit")

Fields

run: Run

Last run that created or updated the record.

id

Internal id, valid only in one DB instance.

uid

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

name

Name of a organism, required field.

ontology_id

NCBI Taxon ID.

scientific_name

Scientific name of a organism.

synonyms

Bar-separated (|) synonyms that correspond to this organism.

description

Description of the organism.

source

Source this record associates with.

previous_runs: Run

Sequence of runs that created or updated the record.

parents

Parent organism records.

artifacts

Artifacts linked to the organism.

created_at: datetime

Time of creation of record.

created_by: User

Creator of record.

updated_at: datetime

Time of last update to record.

Methods