bionty.Pathway¶
- class bionty.Pathway(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[Pathway], source: Source | None)¶
Bases:
BioRecord,TracksRun,TracksUpdatesPathways - Gene Ontology, Pathway Ontology.
Notes
For more info, see tutorials Manage biological registries and Pathway.
Bulk create Pathway records via
from_values.Examples
>>> record = bionty.Pathway.from_public(ontology_id="GO:1903353") >>> record.save()
Fields¶
- run: Run¶
Last run that created or updated the record.
- id¶
Internal id, valid only in one DB instance.
- uid¶
A universal id (hash of selected field).
- name¶
Name of the pathway.
- ontology_id¶
Ontology ID of the pathway.
- abbr¶
A unique abbreviation of pathway.
- synonyms¶
Bar-separated (|) synonyms that correspond to this pathway.
- description¶
Description of the pathway.
- previous_runs: Run¶
Sequence of runs that created or updated the record.
- parents¶
Parent pathway records.
- genes¶
Genes that signifies the pathway.
- feature_sets¶
Featuresets linked to the pathway.
- artifacts¶
Artifacts linked to the pathway.
- created_at: datetime¶
Time of creation of record.
- created_by: User¶
Creator of record.
- updated_at: datetime¶
Time of last update to record.
Methods¶