bionty.Protein¶
- class bionty.Protein(name: str | None, uniprotkb_id: str | None, synonyms: str | None, length: int | None, gene_symbol: str | None, ensembl_gene_ids: str | None, organism: Organism | None, source: Source | None)¶
Bases:
BioRecord
,TracksRun
,TracksUpdates
Proteins - Uniprot.
Notes
For more info, see tutorials Manage biological registries and Protein.
Bulk create Protein records via
from_values
.Examples
>>> record = bionty.Protein.from_public(name="Synaptotagmin-15B", organism="human") >>> record = bionty.Protein.from_public(gene_symbol="SYT15B", organism="human")
Fields¶
- run: Run¶
Last run that created or updated the record.
- id¶
Internal id, valid only in one DB instance.
- uid¶
A universal id (hash of selected field).
- name¶
Unique name of a protein.
- uniprotkb_id¶
UniProt protein ID, 6 alphanumeric characters, possibly suffixed by 4 more.
- synonyms¶
Bar-separated (|) synonyms that correspond to this protein.
- description¶
Description of the protein.
- length¶
Length of the protein sequence.
- gene_symbol¶
The primary gene symbol corresponds to this protein.
- ensembl_gene_ids¶
Bar-separated (|) Ensembl Gene IDs that correspond to this protein.
- previous_runs: Run¶
Sequence of runs that created or updated the record.
- artifacts¶
Artifacts linked to the protein.
- feature_sets¶
Featuresets linked to this protein.
- created_at: datetime¶
Time of creation of record.
- created_by: User¶
Creator of record.
- updated_at: datetime¶
Time of last update to record.
Methods¶