bionty.CellLine

class bionty.CellLine(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[CellLine], source: Source | None)

Bases: BioRecord, TracksRun, TracksUpdates

Cell lines - Cell Line Ontology.

Notes

For more info, see tutorials Manage biological registries and CellLine.

Bulk create CellLine records via from_values.

Examples

>>> standard_name = bionty.CellLine.public().standardize(["K562"])[0]
>>> record = bionty.CellLine.from_public(name=standard_name)

Fields

run: Run

Last run that created or updated the record.

id

Internal id, valid only in one DB instance.

uid

A universal id (hash of selected field).

name

Name of the cell line.

ontology_id

Ontology ID of the cell line.

abbr

A unique abbreviation of cell line.

synonyms

Bar-separated (|) synonyms that correspond to this cell line.

description

Description of the cell line.

source

Source this cell line associates with.

previous_runs: Run

Sequence of runs that created or updated the record.

parents

Parent cell line records.

artifacts

Artifacts linked to the cell line.

created_at: datetime

Time of creation of record.

created_by: User

Creator of record.

updated_at: datetime

Time of last update to record.

Methods