bionty.CellType

class bionty.CellType(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[CellType], public_source: PublicSource | None)

Bases: BioRegistry, TracksRun, TracksUpdates

Cell types - Cell Ontology.

Notes

For more info, see tutorials Manage biological registries and CellType.

Bulk create CellType records via from_values.

Examples

>>> record = bionty.CellType.from_public(name="T cell")

Fields

run ForeignKey

Last run that created or updated the record. Run

id AutoField

Internal id, valid only in one DB instance.

uid CharField

A universal id (hash of selected field).

name CharField

Name of the cell type.

ontology_id CharField

Ontology ID of the cell type.

abbr CharField

A unique abbreviation of cell type.

synonyms TextField

Bar-separated (|) synonyms that correspond to this cell type.

description TextField

Description of the cell type.

public_source ForeignKey

PublicSource this cell type associates with.

previous_runs ManyToManyField

Sequence of runs that created or updated the record.

parents ManyToManyField

Parent cell type records.

artifacts ManyToManyField

Artifacts linked to the cell type.

created_at DateTimeField

Time of creation of record.

created_by ForeignKey

Creator of record. User

updated_at DateTimeField

Time of last update to record.

Methods