bionty.ExperimentalFactor¶
- class bionty.ExperimentalFactor(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[ExperimentalFactor], source: Source | None)¶
Bases:
BioRecord
,TracksRun
,TracksUpdates
Experimental factors - Experimental Factor Ontology.
Notes
For more info, see tutorials Manage biological registries and ExperimentalFactor.
Bulk create ExperimentalFactor records via
from_values
.Examples
>>> standard_name = bionty.ExperimentalFactor.public().standardize(["scRNA-seq"]) >>> record = bionty.ExperimentalFactor.from_public(name=standard_name)
Fields¶
- run: Run¶
Last run that created or updated the record.
- id¶
Internal id, valid only in one DB instance.
- uid¶
A universal id (hash of selected field).
- name¶
Name of the experimental factor.
- ontology_id¶
Ontology ID of the experimental factor.
- abbr¶
A unique abbreviation of experimental factor.
- synonyms¶
Bar-separated (|) synonyms that correspond to this experimental factor.
- description¶
Description of the experimental factor.
- molecule¶
Molecular experimental factor, parsed from EFO.
- instrument¶
Instrument used to measure the experimental factor, parsed from EFO.
- measurement¶
Phenotypic experimental factor, parsed from EFO.
- previous_runs: Run¶
Sequence of runs that created or updated the record.
- parents¶
Parent experimental factor records.
- artifacts¶
Artifacts linked to the experimental_factors.
- created_at: datetime¶
Time of creation of record.
- created_by: User¶
Creator of record.
- updated_at: datetime¶
Time of last update to record.
Methods¶