bionty.Disease

class bionty.Disease(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[Disease], public_source: PublicSource | None)

Bases: BioRegistry, TracksRun, TracksUpdates

Diseases - Mondo, Human Disease.

Notes

Bulk create Disease records via from_values.

For more info, see tutorials: Disease.

Examples

>>> record = bionty.Disease.from_public(name="Alzheimer disease")

Fields

run: Run

Last run that created or updated the record.

id

Internal id, valid only in one DB instance.

uid

A universal id (hash of selected field).

name

Name of the disease.

ontology_id

Ontology ID of the disease.

abbr

A unique abbreviation of disease.

synonyms

Bar-separated (|) synonyms that correspond to this disease.

description

Description of the disease.

public_source

PublicSource this disease associates with.

previous_runs: Run

Sequence of runs that created or updated the record.

parents

Parent disease records.

artifacts

Artifacts linked to the disease.

created_at: datetime

Time of creation of record.

created_by: User

Creator of record.

updated_at: datetime

Time of last update to record.

Methods