bionty.Gene¶
- class bionty.Gene(symbol: str | None, stable_id: str | None, ensembl_gene_id: str | None, ncbi_gene_ids: str | None, biotype: str | None, description: str | None, synonyms: str | None, organism: Organism | None, source: Source | None)¶
Bases:
BioRecord
,TracksRun
,TracksUpdates
Notes
For more info, see tutorials Manage biological registries and Gene.
Bulk create Gene records via
from_values
.Examples
>>> record = bionty.Gene.from_public(symbol="TCF7", organism="human")
Fields¶
- run: Run¶
Last run that created or updated the record.
- id¶
Internal id, valid only in one DB instance.
- uid¶
A universal id (hash of selected field).
- symbol¶
A unique short form of gene name.
- stable_id¶
Stable ID of a gene that doesn’t have ensembl_gene_id, e.g. a yeast gene.
- ensembl_gene_id¶
Ensembl gene stable ID, in the form ENS[organism prefix][feature type prefix][a unique eleven digit number].
- ncbi_gene_ids¶
Bar-separated (|) NCBI Gene IDs that correspond to this Ensembl Gene ID. NCBI Gene ID, also known as Entrez Gene ID, in the form of numeric string, 1 to 9 digits.
- biotype¶
Type of the gene.
- synonyms¶
Bar-separated (|) synonyms that correspond to this gene.
- description¶
Description of the gene.
- previous_runs: Run¶
Sequence of runs that created or updated the record.
- artifacts¶
Artifacts linked to the gene.
- feature_sets¶
Featuresets linked to this gene.
- created_at: datetime¶
Time of creation of record.
- created_by: User¶
Creator of record.
- updated_at: datetime¶
Time of last update to record.
Methods¶