lamindb
¶
A data framework for biology.
Data lineage¶
Track inputs, outputs & environment of a notebook or script run.
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Track a run of your notebook or script. |
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Finish the run and write a run report. |
Decorate a function with @tracked()
to track inputs, outputs & environment of function executions.
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Track function runs. |
Registries¶
Manage artifacts and transforms.
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Datasets & models stored as files, folders, or arrays. |
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Storage locations of artifacts such as S3 buckets or local directories. |
Data transformations such as scripts, notebooks, functions, or pipelines. |
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Runs of transforms such as the execution of a script. |
Validate and annotate artifacts.
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Universal labels. |
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Dataset dimensions. |
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Parameters of runs & models. |
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Schemas of a dataset such as the set of columns of a |
Manage projects.
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Users. |
Collections of artifacts. |
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Projects. |
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Spaces to restrict access to records to specific users or teams. |
References such as internal studies, papers, documents, or URLs. |
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People such as authors of a study or collaborators in a project. |
Other¶
Functions and classes.
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Connect to an instance. |
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View metadata. |
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Bulk save records. |
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Paths: low-level key-value access to files/objects. |
Global live settings ( |
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Global run context ( |
Curators and integrations.
Curators. |
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Integrations. |
Low-level functionality.
Examples. |
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Curators. |
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Integrations. |
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Errors. |
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Setup & configure LaminDB. |
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Base library. |
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Core library. |
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Models library. |