Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W A aaggregate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) abbr (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) absolute() (lamindb.UPath method) abulk_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) abulk_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) access_token (lamindb.setup.core.UserSettings attribute) acontains() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) acount() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) acreate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) add() (lamindb.models.LabelManager method) (lamindb.models.SchemaOptionals method) add_column() (lamindb.core.storage.AnnDataAccessor method) add_from() (lamindb.models.LabelManager method) add_new() (lamindb.curators.core.CatVector method) add_new_from() (lamindb.curators.core.DataFrameCatManager method) add_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (wetlab.Compound class method) add_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) add_values() (lamindb.models.FeatureManager method) aearliest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aexists() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aexplain() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) afirst() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) age (wetlab.Donor attribute) aget() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aget_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aggregate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ain_bulk() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aiterator() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alast() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alatest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alias() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) all() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) anchor (lamindb.UPath property) anndata_ensembl_gene_ids_and_valid_features_in_obs() (in module lamindb.examples.schemas) anndata_file_pbmc68k_test() (in module lamindb.examples.datasets) anndata_human_immune_cells() (in module lamindb.examples.datasets) anndata_mouse_sc_lymph_node() (in module lamindb.examples.datasets) anndata_pbmc3k_processed() (in module lamindb.examples.datasets) anndata_pbmc68k_reduced() (in module lamindb.examples.datasets) anndata_suo22_Visium10X() (in module lamindb.examples.datasets) anndata_with_obs() (in module lamindb.examples.datasets), [1] AnnDataAccessor (class in lamindb.core.storage) AnnDataCurator (class in lamindb.curators) annotate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) annotation (lamindb.core.Settings property) AnnotationSettings (class in lamindb.core.subsettings) api_key (lamindb.setup.core.UserSettings attribute) api_url (lamindb.setup.core.InstanceSettings property) append() (lamindb.Collection method) (lamindb.models.SQLRecordList method) array_rank (lamindb.Feature attribute) array_shape (lamindb.Feature attribute) array_size (lamindb.Feature attribute) artifact Artifact (class in lamindb) artifact_silence_missing_run_warning (lamindb.core.subsettings.CreationSettings attribute) artifact_skip_size_hash (lamindb.core.subsettings.CreationSettings attribute) ArtifactKind (in module lamindb.base.types) artifacts (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Collection attribute) (lamindb.models.FeatureValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ArtifactSet (class in lamindb.models) as_manager() (lamindb.models.BasicQuerySet class method) (lamindb.models.QuerySet class method) as_posix() (lamindb.UPath method) as_uri() (lamindb.UPath method) aupdate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aupdate_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) auto_connect (lamindb.setup.core.SetupSettings property) auto_created (lamindb.models.QueryManager attribute) available_spaces (lamindb.setup.core.InstanceSettings property) B BackedAccessor (class in lamindb.core.storage) base26() (in module lamindb.base.uids) base62() (in module lamindb.base.uids) base62_12() (in module lamindb.base.uids) base62_16() (in module lamindb.base.uids) base62_20() (in module lamindb.base.uids) base62_8() (in module lamindb.base.uids) base64() (in module lamindb.base.uids) BaseSQLRecord (class in lamindb.models) BasicQuerySet (class in lamindb.models) batch (wetlab.Biosample attribute) (wetlab.Donor attribute) (wetlab.Techsample attribute) BFXPipeline (class in bionty.base) BigIntegerField (class in lamindb.base.fields) BinaryField (class in lamindb.base.fields) Biologic (class in wetlab) BiologicType (in module wetlab) bionty module bionty.base module bionty.core module bionty.uids module BioRecord (class in bionty.core) BioSample (class in bionty.base) Biosample (class in wetlab) biosamples (wetlab.Techsample attribute) biotype (bionty.Gene attribute) BlobHashNotFound blocks (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Transform attribute) bmi (wetlab.Donor attribute) BooleanField (class in lamindb.base.fields) branch (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Branch (class in lamindb) branch (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.SetupSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) bulk_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) bulk_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) C cache() (lamindb.Artifact method) (lamindb.Collection method) cache_dir (lamindb.core.Settings property) (lamindb.setup.core.SetupSettings property) (lamindb.setup.core.StorageSettings property) Callback (class in lamindb.integrations.lightning) CanCurate (class in lamindb.models) CannotSwitchDefaultInstance canonical_smiles (wetlab.Compound attribute) cat (lamindb.curators.core.ComponentCurator property) (lamindb.curators.DataFrameCurator property) categoricals (lamindb.curators.core.DataFrameCatManager property) CatLookup (class in lamindb.curators.core) CatVector (class in lamindb.curators.core) cell_lines (wetlab.Biosample attribute) cell_types (wetlab.Biosample attribute) CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) cellmarker() (in module bionty.uids) CellType (class in bionty) (class in bionty.base) CharField (class in lamindb.base.fields) check() (lamindb.models.QueryManager method) check_dtype() (in module lamindb.base.dtypes) check_vars_non_aligned() (lamindb.core.MappedCollection method) check_vars_sorted() (lamindb.core.MappedCollection method) chembl_id (wetlab.Compound attribute) children (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.ULabel attribute) chmod() (lamindb.UPath method) clear() (lamindb.models.SQLRecordList method) close() (lamindb.core.MappedCollection method) (lamindb.core.storage.AnnDataAccessor method) closed (lamindb.core.MappedCollection property) (lamindb.core.storage.AnnDataAccessor property) cloud_to_local() (lamindb.setup.core.StorageSettings method) cloud_to_local_no_update() (lamindb.setup.core.StorageSettings method) coerce_dtype (lamindb.Feature property) (lamindb.Schema property) Collection (class in lamindb) collections (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) column (wetlab.Well attribute) CombinationPerturbation (class in wetlab) complex_filter() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ComponentCurator (class in lamindb.curators.core) components (lamindb.Record attribute) (lamindb.Schema attribute) composites (lamindb.Record attribute) (lamindb.Schema attribute) Compound (class in wetlab) compound (wetlab.CompoundPerturbation attribute) compound_perturbations (wetlab.CombinationPerturbation attribute) CompoundPerturbation (class in wetlab) concentration (wetlab.CompoundPerturbation attribute) concentration_unit (wetlab.CompoundPerturbation attribute) connect() (in module lamindb) contains() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) Context (class in lamindb.core) context (in module lamindb) contribute_to_class() (lamindb.models.QueryManager method) copy() (lamindb.models.SQLRecordList method) count() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.setup.migrate class method) create_cellxgene_schema() (in module lamindb.examples.cellxgene) created_artifacts (lamindb.User attribute) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.TracksRun attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by_id (lamindb.models.TracksRun attribute) created_runs (lamindb.User attribute) created_transforms (lamindb.User attribute) creation (lamindb.core.Settings property) creation_counter (lamindb.models.QueryManager attribute) CreationSettings (class in lamindb.core.subsettings) curate_from_croissant() (in module lamindb.integrations) curator Curator (class in lamindb.curators.core) CurrentInstanceNotConfigured currently_used (bionty.Source attribute) cwd() (lamindb.UPath class method) D data_artifact (lamindb.Collection property) dataframe_artifact (bionty.Source attribute) DataFrameCatManager (class in lamindb.curators.core) DataFrameCurator (class in lamindb.curators) date (lamindb.Reference attribute) (wetlab.Experiment attribute) DateField (class in lamindb.base.fields) dates() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) DateTimeField (class in lamindb.base.fields) datetimes() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) db (lamindb.models.BasicQuerySet property) (lamindb.models.QueryManager property) (lamindb.models.QuerySet property) (lamindb.setup.core.InstanceSettings property) db_manager() (lamindb.models.QueryManager method) DecimalField (class in lamindb.base.fields) deconstruct() (lamindb.models.QueryManager method) default_value (lamindb.Feature property) defer() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) defined_migrations() (lamindb.setup.migrate class method) delete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (in module lamindb.setup) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.BaseSQLRecord method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue method) (lamindb.models.IsVersioned method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecord method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) deploy() (lamindb.setup.migrate class method) deployed_migrations() (lamindb.setup.migrate class method) deprecated() (in module lamindb.base) describe() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.FeatureManager method) (lamindb.models.LabelManager method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Transform method) description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) dev_dir (lamindb.setup.core.SetupSettings property) DevelopmentalStage (class in bionty) (class in bionty.base) df (lamindb.models.InspectResult property) df_iris() (in module lamindb.examples.datasets) df_iris_in_meter() (in module lamindb.examples.datasets) df_iris_in_meter_study1() (in module lamindb.examples.datasets) df_iris_in_meter_study2() (in module lamindb.examples.datasets) dialect (lamindb.setup.core.InstanceSettings property) dict_cellxgene_uns() (in module lamindb.examples.datasets) difference() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) dir_iris_images() (in module lamindb.examples.datasets) dir_scrnaseq_cellranger() (in module lamindb.examples.datasets) disconnect() (in module lamindb.setup) Disease (class in bionty) (class in bionty.base) diseases (wetlab.Biosample attribute) (wetlab.Donor attribute) display_currently_used_sources() (in module bionty.base) display_sources() (in module bionty.base) distinct() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) django() (in module lamindb.setup) doc_args() (in module lamindb.base) DoesNotExist doi (lamindb.Reference attribute) Donor (class in wetlab) download_to() (lamindb.UPath method) drive (lamindb.UPath property) Drug (class in bionty.base) Dtype (in module lamindb.base.types) dtype (lamindb.Feature attribute) (lamindb.Schema attribute) duration (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) DurationField (class in lamindb.base.fields) E earliest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) email (lamindb.setup.core.UserSettings attribute) EmailField (class in lamindb.base.fields) end_date (lamindb.Project attribute) ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) environment (lamindb.Run attribute) environmental_perturbations (wetlab.CombinationPerturbation attribute) EnvironmentalPerturbation (class in wetlab) Ethnicity (class in bionty) (class in bionty.base) ethnicity (wetlab.Donor attribute) exclude() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) exists() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.UPath method) expanduser() (lamindb.UPath method) Experiment (class in wetlab) ExperimentalFactor (class in bionty) (class in bionty.base) explain() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) extend() (lamindb.models.SQLRecordList method) extra() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) F FAIR fake_bio_notebook_titles() (in module lamindb.examples.datasets) feature Feature (class in lamindb) feature (lamindb.models.FeatureValue attribute) feature_sets (lamindb.Artifact attribute) FeatureManager (class in lamindb.models) features (lamindb.Artifact property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record property) (lamindb.Run property) (lamindb.Schema attribute) FeatureValue (class in lamindb.models) FieldAttr (in module lamindb.base.types) FieldValidationError file_bam() (in module lamindb.examples.datasets) file_fastq() (in module lamindb.examples.datasets) file_fcs() (in module lamindb.examples.datasets) file_fcs_alpert19() (in module lamindb.examples.datasets) file_jpg_paradisi05() (in module lamindb.examples.datasets) file_mini_csv() (in module lamindb.examples.datasets) file_tiff_suo22() (in module lamindb.examples.datasets) file_tsv_rnaseq_nfcore_salmon_merged_gene_counts() (in module lamindb.examples.datasets) filter() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) finish() (in module lamindb) finished_at (lamindb.Run attribute) first() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) flexible (lamindb.Schema property) FloatField (class in lamindb.base.fields) ForeignKey (class in lamindb.base.fields) format_message() (lamindb.setup.errors.StorageNotEmpty method) frac_validated (lamindb.models.InspectResult property) from_anndata() (lamindb.Artifact class method) from_dataframe() (lamindb.Artifact class method) (lamindb.Feature class method) (lamindb.Schema class method) from_dict() (lamindb.Feature class method) from_dir() (lamindb.Artifact class method) from_git() (lamindb.Transform class method) from_lazy() (lamindb.Artifact class method) from_mudata() (lamindb.Artifact class method) from_queryset() (lamindb.models.QueryManager class method) from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (wetlab.Compound class method) from_spatialdata() (lamindb.Artifact class method) from_tiledbsoma() (lamindb.Artifact class method) from_values() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.Feature class method) (lamindb.models.CanCurate class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) fs (lamindb.UPath property) G Gene (class in bionty) (class in bionty.base) gene() (in module bionty.uids) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) GenericIPAddressField (class in lamindb.base.fields) genes (bionty.Pathway attribute) (wetlab.PerturbationTarget attribute) genetic_perturbations (wetlab.CombinationPerturbation attribute) GeneticPerturbation (class in wetlab) GeneticPerturbationSystem (in module wetlab) get() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.LabelManager method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SchemaOptionals method) (lamindb.models.SQLRecord class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) get_label_weights() (lamindb.core.MappedCollection method) get_merged_categories() (lamindb.core.MappedCollection method) get_merged_labels() (lamindb.core.MappedCollection method) get_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) get_queryset() (lamindb.models.QueryManager method) get_uids() (lamindb.models.SchemaOptionals method) get_values() (lamindb.models.FeatureManager method) git_repo (lamindb.setup.core.InstanceSettings property) glob() (lamindb.UPath method) group() (lamindb.UPath method) H handle (lamindb.setup.core.UserSettings attribute) (lamindb.User attribute) hardlink_to() (lamindb.UPath method) hash (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.FeatureValue attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) HasParents (class in lamindb.models) home() (lamindb.UPath class method) host (lamindb.setup.core.StorageSettings property) (lamindb.Storage property) I id (lamindb.setup.core.UserSettings property) import_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (wetlab.Compound class method) in_bulk() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) in_db (bionty.Source attribute) inchikey (wetlab.Compound attribute) index (lamindb.Schema property) index() (lamindb.models.SQLRecordList method) init() (in module lamindb.setup) initiated_by_run (lamindb.Run attribute) initiated_runs (lamindb.Run attribute) input_artifacts (lamindb.Run attribute) input_collections (lamindb.Run attribute) input_of_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Record attribute) input_records (lamindb.Run attribute) insert() (lamindb.models.SQLRecordList method) inspect() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate class method) (lamindb.models.QuerySet method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) InspectResult (class in lamindb.models) instance (lamindb.setup.core.SetupSettings property) instance_uid (lamindb.core.Settings property) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) InstanceLockedException InstanceNotSetupError InstanceSettings (class in lamindb.setup.core) instrument (bionty.ExperimentalFactor attribute) IntegerField (class in lamindb.base.fields) IntegrityError intersection() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) InvalidArgument is_absolute() (lamindb.UPath method) is_block_device() (lamindb.UPath method) is_char_device() (lamindb.UPath method) is_connected (lamindb.setup.core.SetupSettings property) is_dir() (lamindb.UPath method) is_fifo() (lamindb.UPath method) is_file() (lamindb.UPath method) is_form (lamindb.Record property) is_junction() (lamindb.UPath method) is_latest (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) is_locked (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) is_mount() (lamindb.UPath method) is_on_hub (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) is_relative_to() (lamindb.UPath method) is_remote (lamindb.setup.core.InstanceSettings property) is_reserved() (lamindb.UPath method) is_socket() (lamindb.UPath method) is_symlink() (lamindb.UPath method) is_type (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.ULabel attribute) is_validated (lamindb.curators.core.CatVector property) IsVersioned (class in lamindb.models) iterator() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) iterdir() (lamindb.UPath method) itype (lamindb.Schema attribute) J joinpath() (lamindb.UPath method) joinuri() (lamindb.UPath method) JSONField (class in lamindb.base.fields) K keep_artifacts_local (lamindb.setup.core.InstanceSettings property) key (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) key_to_filepath() (lamindb.setup.core.StorageSettings method) kind (lamindb.Artifact attribute) L label LabelManager (class in lamindb.models) labels (lamindb.Artifact property) lakehouse lamindb module lamindb.base module lamindb.base.dtypes module lamindb.base.fields module lamindb.base.types module lamindb.base.uids module lamindb.core module lamindb.core.loaders module lamindb.core.storage module lamindb.core.subsettings module lamindb.curators module lamindb.curators.core module lamindb.errors module lamindb.examples module lamindb.examples.cellxgene module lamindb.examples.croissant module lamindb.examples.datasets module lamindb.examples.mlflow module lamindb.examples.schemas module lamindb.examples.wandb module lamindb.integrations module lamindb.integrations.lightning module lamindb.models module lamindb.setup module lamindb.setup.core module lamindb.setup.errors module lamindb.setup.types module last() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) latest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) latest_run (lamindb.Transform property) latest_version() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) LazyArtifact (class in lamindb.models) lchmod() (lamindb.UPath method) length (bionty.Protein attribute) linked_artifacts (lamindb.Record attribute) linked_in_records (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.ULabel attribute) (lamindb.User attribute) linked_projects (lamindb.Record attribute) linked_references (lamindb.Record attribute) linked_runs (lamindb.Record attribute) linked_ulabels (lamindb.Record attribute) linked_users (lamindb.Record attribute) ListLike (in module lamindb.base.types) load() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.ArtifactSet method) load_fcs() (in module lamindb.core.loaders) load_h5ad() (in module lamindb.core.loaders) load_h5mu() (in module lamindb.core.loaders) load_html() (in module lamindb.core.loaders) load_image() (in module lamindb.core.loaders) load_json() (in module lamindb.core.loaders) load_svg() (in module lamindb.core.loaders) load_tsv() (in module lamindb.core.loaders) local_filepath() (lamindb.setup.core.StorageSettings method) local_storage (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) logger (in module lamindb.core) login() (in module lamindb.setup) logout() (in module lamindb.setup) lookup() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) lstat() (lamindb.UPath method) M make_external() (lamindb.models.FeatureManager method) (lamindb.models.LabelManager method) mapped() (lamindb.Collection method) (lamindb.models.ArtifactSet method) MappedCollection (class in lamindb.core) match() (lamindb.UPath method) maximal_set (lamindb.Schema attribute) md5 (bionty.Source attribute) measurement (bionty.ExperimentalFactor attribute) members (lamindb.Schema property) (wetlab.CombinationPerturbation property) Meta (lamindb.models.IsVersioned attribute) (lamindb.models.TracksRun attribute) (lamindb.models.TracksUpdates attribute) meta_artifact (lamindb.Collection attribute) migrate (class in lamindb.setup) mini_immuno() (in module lamindb.examples.croissant) (in module lamindb.examples.datasets) minimal_set (lamindb.Schema attribute) MissingContextUID mkdir() (lamindb.UPath method) modified (lamindb.UPath property) module bionty bionty.base bionty.core bionty.uids lamindb lamindb.base lamindb.base.dtypes lamindb.base.fields lamindb.base.types lamindb.base.uids lamindb.core lamindb.core.loaders lamindb.core.storage lamindb.core.subsettings lamindb.curators lamindb.curators.core lamindb.errors lamindb.examples lamindb.examples.cellxgene lamindb.examples.croissant lamindb.examples.datasets lamindb.examples.mlflow lamindb.examples.schemas lamindb.examples.wandb lamindb.integrations lamindb.integrations.lightning lamindb.models lamindb.setup lamindb.setup.core lamindb.setup.errors lamindb.setup.types wetlab modules (lamindb.setup.core.InstanceSettings property) ModuleWasntConfigured molecule (bionty.ExperimentalFactor attribute) molformula (wetlab.Compound attribute) molweight (wetlab.Compound attribute) mudata_papalexi21_subset() (in module lamindb.examples.datasets) MuDataCurator (class in lamindb.curators) N n (lamindb.Schema attribute) n_empty (lamindb.models.InspectResult property) n_files (lamindb.Artifact attribute) n_max_records (lamindb.core.subsettings.AnnotationSettings attribute) n_observations (lamindb.Artifact attribute) n_unique (lamindb.models.InspectResult property) name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Branch attribute) (lamindb.Collection property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Space attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) non_validated (lamindb.curators.core.DataFrameCatManager property) (lamindb.models.InspectResult property) none() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) NotebookNotSaved NoWriteAccess nullable (lamindb.Feature property) O obs_names (lamindb.core.storage.AnnDataAccessor property) observation off_target_score (wetlab.GeneticPerturbation attribute) on_target_score (wetlab.GeneticPerturbation attribute) on_train_epoch_end() (lamindb.integrations.lightning.Callback method) on_train_start() (lamindb.integrations.lightning.Callback method) one() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) one_or_none() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) OneToOneField (class in lamindb.base.fields) only() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ontology() (in module bionty.uids) ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.EnvironmentalPerturbation attribute) open() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.ArtifactSet method) (lamindb.UPath method) optionals (lamindb.Schema property) order_by() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ordered (lamindb.models.BasicQuerySet property) (lamindb.models.QuerySet property) ordered_artifacts (lamindb.Collection property) ordered_set (lamindb.Schema attribute) organism (bionty.CellMarker attribute) (bionty.core.Settings property) (bionty.Gene attribute) (bionty.Protein attribute) (bionty.Source attribute) Organism (class in bionty) (class in bionty.base) organism (wetlab.Biosample attribute) (wetlab.Donor attribute) original_shapes (lamindb.core.MappedCollection property) ORM otype (lamindb.Artifact attribute) (lamindb.Schema attribute) output_artifacts (lamindb.Run attribute) output_collections (lamindb.Run attribute) output_records (lamindb.Run attribute) overwrite_versions (lamindb.Artifact property) owner (lamindb.setup.core.InstanceSettings property) owner() (lamindb.UPath method) P params (lamindb.Run attribute) parent (lamindb.UPath property) parents (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (wetlab.Compound attribute) parts (lamindb.UPath property) password (lamindb.setup.core.UserSettings attribute) path (lamindb.Artifact property) (lamindb.models.LazyArtifact property) (lamindb.Storage property) (lamindb.UPath property) paths (lamindb.setup.core.SetupSettings property) Pathway (class in bionty) (class in bionty.base) pathways (wetlab.PerturbationTarget attribute) PerturbationTarget (class in wetlab) Phenotype (class in bionty) (class in bionty.base) pk (lamindb.models.IsVersioned property) (lamindb.models.TracksRun property) (lamindb.models.TracksUpdates property) pop() (lamindb.models.SQLRecordList method) PositiveIntegerField (class in lamindb.base.fields) PositiveSmallIntegerField (class in lamindb.base.fields) predecessors (lamindb.Project attribute) (lamindb.Transform attribute) prefetch_related() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) private_django_api (lamindb.setup.core.SetupSettings property) Project (class in lamindb) project (lamindb.core.Context property) projects (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) Protein (class in bionty) (class in bionty.base) protein() (in module bionty.uids) proteins (wetlab.Biologic attribute) (wetlab.PerturbationTarget attribute) protocol (lamindb.UPath property) proxy_dtype (lamindb.Feature attribute) public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (wetlab.Compound class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) pubmed_id (lamindb.Reference attribute) Q query (lamindb.models.BasicQuerySet property) (lamindb.models.QuerySet property) query_children() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (wetlab.Compound method) query_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (wetlab.Compound method) query_records() (lamindb.Record method) query_types() (lamindb.Record method) (lamindb.ULabel method) QueryManager (class in lamindb.models) QuerySet (class in lamindb.models) R raw() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) read_bytes() (lamindb.UPath method) read_text() (lamindb.UPath method) readlink() (lamindb.UPath method) record Record (class in lamindb) record (lamindb.setup.core.StorageSettings property) records (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) Reference (class in lamindb) reference (lamindb.Collection attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) reference_type (lamindb.Collection attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) references (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Transform attribute) region (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) registry Registry (class in lamindb.models) relative_to() (lamindb.UPath method) remove() (lamindb.models.SchemaOptionals method) (lamindb.models.SQLRecordList method) remove_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) remove_values() (lamindb.models.FeatureManager method) rename() (lamindb.UPath method) replace() (lamindb.Artifact method) (lamindb.UPath method) report (lamindb.Run attribute) resolve() (lamindb.UPath method) resolve_expression() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) restore() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.FeatureValue method) (lamindb.models.SQLRecord method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) reverse() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) rglob() (lamindb.UPath method) rmdir() (lamindb.UPath method) root (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.UPath property) root_as_str (lamindb.setup.core.StorageSettings property) row (wetlab.Well attribute) run (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Run (class in lamindb) run (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.TracksRun attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) run_id (lamindb.models.TracksRun attribute) runs (lamindb.models.FeatureValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) S samefile() (lamindb.UPath method) sample save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (in module lamindb) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.BaseSQLRecord method) (lamindb.models.FeatureValue method) (lamindb.models.IsVersioned method) (lamindb.models.LazyArtifact method) (lamindb.models.SQLRecord method) (lamindb.models.SQLRecordList method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) save_artifact() (lamindb.curators.AnnDataCurator method) (lamindb.curators.core.ComponentCurator method) (lamindb.curators.core.Curator method) (lamindb.curators.core.SlotsCurator method) (lamindb.curators.DataFrameCurator method) (lamindb.curators.MuDataCurator method) (lamindb.curators.SpatialDataCurator method) (lamindb.curators.TiledbsomaExperimentCurator method) save_cellxgene_defaults() (in module lamindb.examples.cellxgene) save_mlflow_features() (in module lamindb.examples.mlflow) save_tiledbsoma_experiment() (in module lamindb.integrations) save_vitessce_config() (in module lamindb.integrations) save_wandb_features() (in module lamindb.examples.wandb) schema Schema (class in lamindb) schema (lamindb.Artifact attribute) (lamindb.Record attribute) SchemaOptionals (class in lamindb.models) schemas (bionty.CellMarker attribute) (bionty.Gene attribute) (bionty.Pathway attribute) (bionty.Protein attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Schema attribute) schmidt22_crispra_gws_IFNG() (in module lamindb.examples.datasets) schmidt22_perturbseq() (in module lamindb.examples.datasets) scientific_name (bionty.Organism attribute) search() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) search_names (lamindb.core.subsettings.CreationSettings attribute) select_for_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) select_related() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) sequence (wetlab.GeneticPerturbation attribute) set() (lamindb.models.SchemaOptionals method) set_abbr() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) Settings (class in bionty.core) (class in lamindb.core) settings (in module bionty) (in module bionty.base) (in module lamindb) (in module lamindb.setup) settings_dir (lamindb.setup.core.SetupSettings property) SettingsEnvFileOutdated SetupSettings (class in lamindb.setup.core) sex (wetlab.Donor attribute) shape (lamindb.core.MappedCollection property) show() (lamindb.setup.errors.StorageNotEmpty method) (lamindb.setup.migrate class method) size (lamindb.Artifact attribute) slot (lamindb.Schema attribute) slots (lamindb.curators.AnnDataCurator property) (lamindb.curators.core.SlotsCurator property) (lamindb.curators.DataFrameCurator property) (lamindb.curators.MuDataCurator property) (lamindb.curators.SpatialDataCurator property) (lamindb.curators.TiledbsomaExperimentCurator property) (lamindb.models.FeatureManager property) (lamindb.Schema property) SlotsCurator (class in lamindb.curators.core) slug (lamindb.setup.core.InstanceSettings property) SlugField (class in lamindb.base.fields) SmallIntegerField (class in lamindb.base.fields) smiles (wetlab.Compound attribute) sort() (lamindb.models.SQLRecordList method) source (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) Source (class in bionty) source (wetlab.Compound attribute) source() (in module bionty.uids) source_code (lamindb.Transform attribute) source_website (bionty.Source attribute) space (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Space (class in lamindb) space (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.FeatureValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.SetupSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) spatialdata_blobs() (in module lamindb.examples.datasets) SpatialDataAccessor (class in lamindb.core.storage) SpatialDataCurator (class in lamindb.curators) SQLRecord (class in lamindb.models) SQLRecordList (class in lamindb.models) SQLRecordNameChangeIntegrityError squash() (lamindb.setup.migrate class method) stable_id (bionty.Gene attribute) standardize() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.curators.core.CatVector method) (lamindb.curators.core.ComponentCurator method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.curators.DataFrameCurator method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate class method) (lamindb.models.QuerySet method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) start_date (lamindb.Project attribute) started_at (lamindb.Run attribute) stat() (lamindb.UPath method) StaticReference (class in bionty.core) status (lamindb.Run property) stem (lamindb.UPath property) stem_uid (lamindb.Artifact property) (lamindb.Collection property) (lamindb.models.IsVersioned property) (lamindb.Transform property) Storage (class in lamindb) storage (lamindb.Artifact attribute) (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.SetupSettings property) storage_options (lamindb.UPath property) StorageAlreadyManaged StorageNotEmpty StorageSettings (class in lamindb.setup.core) StorageType (in module lamindb.setup.types) StrField (in module lamindb.base.types) successors (lamindb.Project attribute) (lamindb.Transform attribute) suffix (lamindb.Artifact attribute) (lamindb.UPath property) suffixes (lamindb.UPath property) SUPPORTED_SUFFIXES (in module lamindb.core.loaders) symbol (bionty.Gene attribute) symlink_to() (lamindb.UPath method) sync_git_repo (lamindb.core.Settings property) synchronize_to() (lamindb.UPath method) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (lamindb.Feature attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) synonyms_mapper (lamindb.models.InspectResult property) system (wetlab.GeneticPerturbation attribute) T targets (wetlab.Biologic attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.GeneticPerturbation attribute) Techsample (class in wetlab) text (lamindb.Reference attribute) TextField (class in lamindb.base.fields) TiledbsomaExperimentCurator (class in lamindb.curators) TimeField (class in lamindb.base.fields) Tissue (class in bionty) (class in bionty.base) tissues (wetlab.Biosample attribute) to_artifact() (lamindb.Record method) to_dataframe() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.models.SQLRecordList method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) to_dict() (lamindb.core.storage.AnnDataAccessor method) to_list() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) to_memory() (lamindb.core.storage.AnnDataAccessor method) to_url() (lamindb.UPath method) torch_worker_init_fn() (lamindb.core.MappedCollection class method) touch() (lamindb.UPath method) track() (in module lamindb) track_run_input_manager() (lamindb.models.QueryManager method) track_run_inputs (lamindb.core.Settings attribute) tracked() (in module lamindb) TracksRun (class in lamindb.models) TracksUpdates (class in lamindb.models) transform Transform (class in lamindb) transform (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.Context property) (lamindb.Run attribute) transforms (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) TransformType (in module lamindb.base.types) type (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) type_is_cloud (lamindb.setup.core.StorageSettings property) type_to_dataframe() (lamindb.Record method) U UI ui_url (lamindb.setup.core.InstanceSettings property) uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ULabel (class in lamindb) ulabels (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) union() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) unit (lamindb.Feature attribute) (wetlab.EnvironmentalPerturbation attribute) UnknownStorageLocation unlink() (lamindb.UPath method) UPath (class in lamindb) UPathStr (in module lamindb.base.types) (in module lamindb.setup.types) update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) update_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) update_smiles() (wetlab.Compound method) UpdateContext updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) upload_from() (lamindb.UPath method) url (bionty.Source attribute) (lamindb.Project attribute) (lamindb.Reference attribute) URLField (class in lamindb.base.fields) use_in_migrations (lamindb.models.QueryManager attribute) User (class in lamindb) user (lamindb.setup.core.SetupSettings property) users (lamindb.Artifact attribute) UserSettings (class in lamindb.setup.core) using() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.FeatureValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.Registry method) (lamindb.models.SQLRecord class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) UUIDField (class in lamindb.base.fields) V valid_features() (in module lamindb.examples.schemas) VALID_SUFFIXES (in module lamindb.core.storage) validate() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.curators.AnnDataCurator method) (lamindb.curators.core.CatVector method) (lamindb.curators.core.ComponentCurator method) (lamindb.curators.core.Curator method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.curators.core.SlotsCurator method) (lamindb.curators.DataFrameCurator method) (lamindb.curators.MuDataCurator method) (lamindb.curators.SpatialDataCurator method) (lamindb.curators.TiledbsomaExperimentCurator method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate class method) (lamindb.models.QuerySet method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) validated (lamindb.models.InspectResult property) validated_artifacts (lamindb.Schema attribute) ValidateFields (class in lamindb.models) ValidationError value (lamindb.models.FeatureValue attribute) (wetlab.EnvironmentalPerturbation attribute) values (lamindb.curators.core.CatVector property) (lamindb.Feature attribute) values() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) values_artifact (lamindb.Record attribute) values_json (lamindb.Record attribute) values_list() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) values_project (lamindb.Record attribute) values_record (lamindb.Record attribute) values_reference (lamindb.Record attribute) values_run (lamindb.Record attribute) values_ulabel (lamindb.Record attribute) values_user (lamindb.Record attribute) var_names (lamindb.core.storage.AnnDataAccessor property) variable verbosity (lamindb.core.Settings property) version (bionty.Source attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Transform attribute) versions (lamindb.Artifact property) (lamindb.Collection property) (lamindb.models.IsVersioned property) (lamindb.Transform property) view() (in module lamindb) view_children() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (wetlab.Compound method) view_lineage() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Transform method) view_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (wetlab.Compound method) view_tree() (lamindb.UPath method) W walk() (lamindb.UPath method) Well (class in wetlab) wetlab module with_config() (lamindb.Feature method) with_name() (lamindb.UPath method) with_segments() (lamindb.UPath method) with_stem() (lamindb.UPath method) with_suffix() (lamindb.UPath method) write_bytes() (lamindb.UPath method) write_text() (lamindb.UPath method)