pertdb.PerturbationTarget ¶

class pertdb.PerturbationTarget(*args, **kwargs)¶

Bases: BioRecord, TracksRun, TracksUpdates

Models perturbation targets such as Gene, Pathway, and Protein.

Example:

import bionty as bt
import pertdb

gene_1 = bt.Gene.from_source(ensembl_gene_id="ENSG00000000003").save()
gene_2 = bt.Gene.from_source(ensembl_gene_id="ENSG00000000005").save()
targets = pertdb.PerturbationTarget(name="TSPAN6_TNMD").save()
targets.genes.set([gene_1, gene_2])

name: str¶: Name of the perturbation target.

genes: bionty.Gene¶: Genes of the perturbation target, link to Gene records.

pathways: bionty.Pathway¶: Pathways of the perturbation target, link to Pathway records.

proteins: bionty.Protein¶: Proteins of the perturbation target, link to Protein records.

artifacts: Artifact¶: Artifacts linked to the perturbation target.