SoonΒΆ
hubΒΆ
π Add documentation to register a db server PR @fredericenard
π Improve on-prem data infrastructure setup documentation PR @fredericenard
π Update main landing page image PR @sunnyosun
β¨ Add
lamin.ai/explore
PR @falexwolf⨠Show projects for artifacts and transforms PR @sunnyosun
πΈ Indicate re-created artifacts for all runs PR @falexwolf
π Clean up Overview page PR @falexwolf
πΈ De-duplicate versions in the card boxes of the
Overview
page PR @falexwolfπ Fix display of dropdown behind
Schema
filter button onArtifacts
page PR @falexwolfπ Display transform keys PR @sunnyosun
π Create a more intuitive artifact page PR @chaichontat
Allow editing of transform name and attaching/detaching labels PR @awgaan
β¨ Dynamic code copy for R and Python PR @chaichontat
πΈ Improve speed and relevance of search PR @falexwolf
v0.31.0 PR @chaichontat
dbΒΆ
π Fix comparisons to
__isnull
for feature-based queries PR @falexwolfπ Add tests and docs for multivalue curation PR @sunnyosun
π· Exclude sub directory from source distribution on pypi PR @falexwolf
π©Ή Handle kind update PR @falexwolf
π Move writelog to laminhub for time being PR @falexwolf
β¨ Support curating lists as values in
DataFrameCurator
PR @sunnyosunβ»οΈ Move cloud-hitting tests into storage test group PR @falexwolf
π Fix transfer for cases in which genes are insufficiently populated PR @falexwolf
β»οΈ Support combined UID format for
lamindb_featurevalue
inWriteLog
PR @alexrasβ»οΈ Squash migrations PR @falexwolf
β¨ Allow to reset
django.conf.settings
to connect to another instance in the same process PR @Koncopdβ»οΈ Minor simplifications to
WriteLog
schema PR @falexwolfβ»οΈ No longer install
contenttypes
PR @falexwolfβ»οΈ Do no longer duplicate tracking of predecessors through the corresponding link table on
Transform
PR @falexwolfποΈ Bulk of schema migrations for 1.6 PR @falexwolf
β Fix hub-local tests for βMake organization members independent from teamsβ PR @Koncopd
π Fix project labeling PR @falexwolf
β¨ Introduce a
Branch
registry PR @falexwolf⨠Introduce a
Branch
registry PR @falexwolfβ»οΈ Rename
DBRecord
toSQLRecord
PR @falexwolf⨠Introduce a flexible
Record
registry PR @falexwolfπ©Ή Do not re-synchronize on
ImportError
inArtifact.load()
PR @KoncopdποΈ Set current space when transferring records PR @Koncopd
πΈ Clearer error in
parse_cat_dtype
if cat dtype contains a module name and the module is not found PR @Koncopdπ©Ή
_db
inconnect
now takes full precedence over hub and locally stored connections PR @Koncopdπ©Ή Do not raise an error if a different db connection is explicitly provided on
connect
PR @KoncopdπΈ Better error message when user passes manual
uid
totrack()
+ anticipate that the user might want to create new transforms in some cases also if hash matches PR @falexwolf⨠Add
is_run_input
toArtifact.get()
andCollection.get()
PR @Koncopdπ Fix legacy output attributes of transform PR @falexwolf
π Fix CI due to enabling fine-grained access on lamindata PR @Koncopd
πΈ Improve setting relationships of unsaved records UX PR @Zethson
π©Ή Catch exceptions on creating lamin settings directory PR @Koncopd
πΈ Improve
DoesNotExist
error message uponDBRecord.get()
PR @Zethsonπ Correct field name in
_select_storage_or_parent
PR @KoncopdπΈ Integrate the
Param
into theFeature
registry PR @falexwolfβ»οΈ Rename
Record
toDBRecord
PR @falexwolfβ»οΈ Rename instance and paths for writelog tests PR @Koncopd
β»οΈ Rename
Record
toDBRecord
PR @falexwolf⨠Add a
writelog
table, implement trigger installation PR @alexrasπ¨ Fix
feature.describe
when value is a list PR @sunnyosunβ»οΈ Mark internal lamindb-produced artifacts with
kind="__lamindb__"
instead of_branch_code=0
PR @falexwolf
usecasesΒΆ
π Polish scrna guide PR @falexwolf
β»οΈ Rename
Record
toDBRecord
PR @falexwolfβ»οΈ Rename
Record
toDBRecord
PR @falexwolfβ»οΈ Refactor spatialdata guide PR @falexwolf
β»οΈ Refactor
scrna
use case to leverageschema
-based curator and prepare lamindb release 1.5.0 PR @falexwolfπ· Only issue slack notif upon repository dispatch PR @falexwolf
β¨ Added a Vitessce screenshot to the spatial guide PR @namsaraeva
β¬οΈ Update single-cell example notebooks to be compatible with most recent scportrait release PR @sophiamaedler
π Fix for lamindb 1.4 PR @falexwolf
π Fix CI for lamindb 1.4 PR @falexwolf
π¨ Make compound name TextField and fix related names PR @sunnyosun
π Move
ehrcuration.ipynb
from lamindb here to seed data typeEHR
PR @falexwolfπ Fix PR @falexwolf
π Move
Curator
tolamindb
PR @falexwolfπ Fix for 1.2.0 PR @falexwolf
π Add
PertCurator
notebook back PR @falexwolfπ Prettify and fix PR @falexwolf
π Move
PertCurator
intolamindb
PR @falexwolfπ Rename
artifact.biosamples
toartifact.clinicore_biosamples
PR @sunnyosunβ»οΈ Squash migrations PR @falexwolf
βͺοΈ Revert donor to ULabel PR @sunnyosun
π Map feature
donor_id
toDonor.name
PR @sunnyosunπ¨ Sort curated columns in
PertCurator
PR @sunnyosunπ Fix PR @falexwolf
π¨ Make sure
pert_
column categories are consistent PR @sunnyosunπ Deprecate the
--schema
argument oflamin init
in favor of--modules
PR @falexwolfβ¬οΈ Upgrade to lamindb 1.0a1 PR @falexwolf
π Migrate to lamindb 1.0 PR @falexwolf
π Migrate to lamindb 1.0 PR @falexwolf
π Migrate to lamindb 1.0 PR @falexwolf
β Fail CI if
cellxgene-schema
CLI validation fails PR @Zethsonπ¨ Set up sources dynamically PR @sunnyosun
π¨ Do not check embedding in .validate PR @sunnyosun
ποΈ Integrate
lnschema-core
intolamindb
PR @falexwolfποΈ Integrate
lnschema-core
intolamindb
PR @falexwolfποΈ Integrate
lnschema-core
intolamindb
PR @falexwolf⨠PertCurator PR @sunnyosun
β¬οΈ Fix import PR @sunnyosun
π Fix docs & import PR @falexwolf
π± Create the Biologic registry PR @falexwolf
π Fix pert nb PR @sunnyosun
π¨ Fix model relationships PR @sunnyosun
β¨ Rename
Treatment
toPerturbation
, addDonor
registry, improveGeneticPerturbationSystem
typing PR @Zethsonπ¨ Fix link tables of Biosample and Techsample PR @sunnyosun
π Fix for 0.77.1 PR @falexwolf
β¨ Add script to add references to existing corpus PR @Zethson
π¨ Re-create 1st migration PR @sunnyosun
π¨ Clean up PR @sunnyosun
β¬οΈ Clean up PR @sunnyosun
π¨ Clean up PR @sunnyosun
β¬οΈ Update lamindb PR @sunnyosun
β¬οΈ Update lamindb deps PR @sunnyosun
π Fix literal PR @sunnyosun
biontyΒΆ
β»οΈ Rename
Record
toDBRecord
PR @falexwolfβ»οΈ Refactor uid encoding so that it becomes usable in the hub PR @falexwolf
β»οΈ Do not change global verbosity PR @falexwolf