Soon
ΒΆ
hubΒΆ
dbΒΆ
π More polish for the
manage-changesdoc PR @falexwolf⨠Compatibility of
ln.track()andln.finish()with Marimo notebooks PR @ishitajain9717β¨ Pull existing artifacts for
s3/gspaths inAUTO_KEY_PREFIXwhen creating an artifact PR @Koncopd⨠Expose storage hub record from
StorageSettingsPR @Koncopdπ More visibility for branching in the docs PR @falexwolf
:art: Add safeguards against non-latest
revisesargument on saving a versioned sqlrecord PR @KoncopdπΈ Simplify the curator logs and advocate explicit object construction instead of
add_new_from()PR @falexwolfπ Fix de-duplication of feature names within
.to_dataframe(include="features")PR @falexwolf⨠Add explicit
key_is_virtualargument toArtifact.__init__(...)PR @Koncopd:memo: README v5.7: Better language PR @falexwolf
πΈ Warn about reducing the default value for
limitin.to_dataframe()from 100 to 20 PR @falexwolfβ Add an explicit multi-instance unit test group PR @falexwolf
:memo: Update
CONTRIBUTING.mdPR @sheetalgiri:construction_worker: Fix modal legacy API PR @falexwolf
πΈ Point version option to
lamindb-corePR @falexwolfπ₯ Correct error for unmanaged storages in storage settings setters PR @Koncopd
β¨ Enable
lamin loadfor notes PR @falexwolfβ»οΈ Fix deprecation warnings PR @falexwolf
β»οΈ More convenient saving of
README.mdPR @falexwolf⨠Enable
ln.connect()in marimo notebooks PR @ishitajain9717πΈ Clear error on reading old versions of artifacts with
overwrite_versions=TruePR @KoncopdπΈ Improve UX of auto-selected managed storage locations for a space PR @falexwolf
π₯ Raise an error on write streaming for artifacts with
overwrite_version=FalsePR @Koncopd⨠Move artifact to a new storage location on key change PR @Koncopd
π Fix small docs issues PR @falexwolf
β»οΈ De-duplicate feature names in
QuerySet.to_dataframe(include="features")PR @falexwolfπ Fix environment variable names for
lamin-managerPR @fredericenardβ»οΈ Re-use
owner_name_from_identifierin theDBclass PR @falexwolfβ»οΈ Refactor to use the term
moveinstead oftransferto move artifacts between storage location PR @Koncopd⨠Move artifact to a new storage location on suffix change PR @Koncopd
π Better document collection vs folder and clarify that
ArtifactSetcan also be streamed PR @falexwolf
usecasesΒΆ
π Fix typo in arc tutorial PR @sunnyosun
β»οΈ Start running the curation notebook again PR @falexwolf
π· Re-enable running the
sc-imagingguide on CI PR @falexwolf:recycle: More robust execution strategy PR @falexwolf
β¨ Add DNA methylation usecase PR @sheetalgiri
:sparkles: Add the laminated Scanpy
pbmc3ktutorial PR @sheetalgiriModify Artifact dataframe features in spatial3.md PR @falexwolf
β»οΈ Reflect overhauled lightning integration PR @falexwolf
:bug: Make the cellxgene registration workflow more robust PR @ishitajain9717
πΈ No need for a LaminDB instance just to query PR @falexwolf
π¨ Fix formatting in the spatial guide PR @namsaraeva
π Remove scanpy pinning PR @namsaraeva
π· Clean up repo PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
π Update guides to reflect the overhauled
lightningintegration PR @Zethsonβ»οΈ Simplify and clarify usage of
@ln.flow()PR @falexwolfπ Fix
_set_default_colors_for_categorical_obsfor the spatial guide PR @namsaraevaπ· Polish repo setup PR @falexwolf
π Rename wetlab to pertdb PR @sunnyosun
π Polish 3 βLeverage ontologiesβ guides and the
geneguide PR @sunnyosunπ Fix CI PR @sunnyosun
ποΈ Use
_dtype_strrather thandtypePR @falexwolfπ Fix errors and outdated code in cellxgene guide PR @sunnyosun
π Overhaul the
spatialdataguide PR @namsaraevaπ Fix CI PR @sunnyosun
β»οΈ Rename QueryDB to DB and arc_db to db PR @falexwolf
π Rename
QueryDBtoDBandcxg_dbtodbPR @falexwolfUpdate notebook link and dataset description in spatial4 PR @namsaraeva
β»οΈ Migrate
scrna2to schema-based curator and simplify heavily PR @falexwolfπ Rename
.using()to.connect()PR @falexwolfRemove hide output from code cell in sc-imaging4 PR @namsaraeva
π₯ Remove
analysis-flowuse case PR @falexwolfπ Rename
df()toto_dataframe()PR @falexwolfπ Rename
.df()to.to_dataframe()PR @falexwolfβ»οΈ Move
arc-virtual-cell-atlasandhubmapnotebook here PR @falexwolfβ»οΈ Canonicalize import patterns PR @falexwolf