Soon
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hubΒΆ
dbΒΆ
π Do not show transform description in
run.describe()PR @falexwolfβ»οΈ Enable
to_dataframe(include='features')also forRunPR @falexwolfβ»οΈ Make feature nullable on
RunRecordPR @falexwolfβ Test using only principal foreign key for link table write RLS PR @Koncopd
π Improve documentation for
Artifact.from_anndata(...)PR @Koncopdπ Except only specific import error in
with_package_objandwith_packagePR @Koncopdβ‘οΈ Avoid unnecessary
pandasandanndataimports onArtifactinitialization PR @Koncopdπ Fix
record.to_artifact()export in casemaximal_setisTrueand record names are not populated PR @falexwolf⨠Allow users to pass kwargs to
write_h5adandwrite_zarrinArtifact.from_anndata(...)PR @Koncopdπ©Ή Do not use get requests for
has_instance_quotarpc PR @Koncopdπ Invoke original signal handlers in
LogStreamTracker.cleanup()and other fixes PR @KoncopdBump: s3fs PR @danplischke
π₯ Remove legacy collaborator logic with
account_instancePR @KoncopdπΈ Warn if working with a non-latest version of an artifact PR @Koncopd
π Recommend
FeatureManager.set_values()and warn thatFeatureManager.add_values()can invalidate thedtypeof categorical feature annotations under certain circumstances PR @ishitajain9717πΈ In the storage module, lazily import heavy dependencies like
anndataPR @falexwolfπ· Profile the import time of
lamindb.core.storagePR @falexwolf
usecasesΒΆ
:bug: Make the cellxgene registration workflow more robust PR @ishitajain9717
πΈ No need for a LaminDB instance just to query PR @falexwolf
π¨ Fix formatting in the spatial guide PR @namsaraeva
π Remove scanpy pinning PR @namsaraeva
π· Clean up repo PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
π Update guides to reflect the overhauled
lightningintegration PR @Zethsonβ»οΈ Simplify and clarify usage of
@ln.flow()PR @falexwolfπ Fix
_set_default_colors_for_categorical_obsfor the spatial guide PR @namsaraevaπ· Polish repo setup PR @falexwolf
π Rename wetlab to pertdb PR @sunnyosun
π Polish 3 βLeverage ontologiesβ guides and the
geneguide PR @sunnyosunπ Fix CI PR @sunnyosun
ποΈ Use
_dtype_strrather thandtypePR @falexwolfπ Fix errors and outdated code in cellxgene guide PR @sunnyosun
π Overhaul the
spatialdataguide PR @namsaraevaπ Fix CI PR @sunnyosun
β»οΈ Rename QueryDB to DB and arc_db to db PR @falexwolf
π Rename
QueryDBtoDBandcxg_dbtodbPR @falexwolfUpdate notebook link and dataset description in spatial4 PR @namsaraeva
β»οΈ Migrate
scrna2to schema-based curator and simplify heavily PR @falexwolfπ Rename
.using()to.connect()PR @falexwolfRemove hide output from code cell in sc-imaging4 PR @namsaraeva
π₯ Remove
analysis-flowuse case PR @falexwolfπ Rename
df()toto_dataframe()PR @falexwolfπ Rename
.df()to.to_dataframe()PR @falexwolfβ»οΈ Move
arc-virtual-cell-atlasandhubmapnotebook here PR @falexwolfβ»οΈ Canonicalize import patterns PR @falexwolf
biontyΒΆ
π Fix duplicates in Ensembl prefixes for organisms PR @falexwolf
β»οΈ Clean up migrations PR @falexwolf
β‘οΈ Squash migrations PR @falexwolf
ποΈ Add
created_onfield for LaminDB v2.2 PR @falexwolfβ‘οΈ Lazily import pandas PR @falexwolf
Update README PR @falexwolf