Soon

hub

• 📝 Add documentation to register a db server PR @fredericenard

• 📝 Improve on-prem data infrastructure setup documentation PR @fredericenard

• 💄 Update main landing page image PR @sunnyosun

• ✨ Add lamin.ai/explore PR @falexwolf

• ✨ Show projects for artifacts and transforms PR @sunnyosun

• 🚸 Indicate re-created artifacts for all runs PR @falexwolf

• 💄 Clean up Overview page PR @falexwolf

• 🚸 De-duplicate versions in the card boxes of the Overview page PR @falexwolf

• ✨ Group ulabels by type PR @awgaan

• 🐛 Fix display of dropdown behind Schema filter button on Artifacts page PR @falexwolf

• 💄 Display transform keys PR @sunnyosun

• 💄 Create a more intuitive artifact page PR @chaichontat

• Allow editing of transform name and attaching/detaching labels PR @awgaan

• ✨ Dynamic code copy for R and Python PR @chaichontat

• 🚸 Improve speed and relevance of search PR @falexwolf

• v0.31.0 PR @chaichontat

db

• ⬆️ Upgrade lamindb-setup and bionty PR @Koncopd

• 📝 Polish README and artifact.describe() PR @falexwolf

• 🗑️ Deprecate UPath.synchronize PR @Koncopd

• ⬆️ Upgrade lamindb-setup to fix UPath.to_url PR @Koncopd

• 🐛 Rework get_storage_region() to make it reliable and use it in upath.to_url() PR @Koncopd

• 📝 Add an actual README PR @falexwolf

• ⬆️ Upgrade wetlab PR @Zethson

• 🐛 Fix deletion of cloud transfer local instance PR @Zethson

• ⚡️ Enable retries for supabase requests PR @Koncopd

• ♻️ More efficient tests cleanup PR @sunnyosun

• ✨ Get CELLxGENE Schema & ✨ enable curation of Feature typed indices PR @Zethson

• 📝 More readable docstring PR @Zethson

• 🐛 Fix creation of a Schema with is_type=True PR @sunnyosun

• 🐛 Fix index hash calculation for Schema PR @sunnyosun

• ⚡️ Implement performant synchronization for directories PR @Koncopd

• ⚡️ Implement performant synchronization for directories PR @Koncopd

usecases

• 🎨 Remove Pertcurator PR @Zethson

• 🎨 Move bulk to Schema PR @Zethson

• 📝 Update sc-imaging guide PR @namsaraeva

• 💚 Fix CI PR @sunnyosun

• 💚 Fix source PR @sunnyosun

• ♻️ No backward relationship on branch and space PR @falexwolf

• 🎨 Run all on dispatch & fix CI PR @Zethson

• 💄 Polish scrna guide PR @falexwolf

• ♻️ Rename Record to DBRecord PR @falexwolf

• ♻️ Rename Record to DBRecord PR @falexwolf

• ♻️ Refactor spatialdata guide PR @falexwolf

• ♻️ Refactor scrna use case to leverage schema-based curator and prepare lamindb release 1.5.0 PR @falexwolf

• ✨ Added a Vitessce screenshot to the spatial guide PR @namsaraeva

• ⬆️ Update single-cell example notebooks to be compatible with most recent scportrait release PR @sophiamaedler

• 💚 Fix for lamindb 1.4 PR @falexwolf

• 💚 Fix CI for lamindb 1.4 PR @falexwolf

• ✨ Add mlflow example PR @Zethson

• ✨ New spatial data guide PR @Zethson

• ✨ By data-type - imaging PR @Zethson

• 🎨 Polish nbs PR @Zethson

• 🎨 Make compound name TextField and fix related names PR @sunnyosun

• 🚚 Move ehrcuration.ipynb from lamindb here to seed data type EHR PR @falexwolf

• 💚 Fix PR @falexwolf

• 🚚 Move Curator to lamindb PR @falexwolf

• ✏️ Use key instead of description PR @Zethson

• 📝 Fix for 1.2.0 PR @falexwolf

• 📝 Add PertCurator notebook back PR @falexwolf

• 💚 Prettify and fix PR @falexwolf

• ✨ Add finished_at PR @Zethson

• 🚚 Move PertCurator into lamindb PR @falexwolf

• 🚚 Rename artifact.biosamples to artifact.clinicore_biosamples PR @sunnyosun

• ♻️ Squash migrations PR @falexwolf

• ✨ Upgrade ruff and pre-commit config PR @Zethson

• ⏪️ Revert donor to ULabel PR @sunnyosun

• 💚 Map feature donor_id to Donor.name PR @sunnyosun

• 🎨 Sort curated columns in PertCurator PR @sunnyosun

• 🎨 Remove lnschema-core PR @Zethson

• 💚 Fix PR @falexwolf

• 🎨 Make sure pert_ column categories are consistent PR @sunnyosun

• 🚚 Deprecate the --schema argument of lamin init in favor of --modules PR @falexwolf

• ⬆️ Upgrade to lamindb 1.0a1 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🐛 Fix default values PR @Zethson

• ✅ Fail CI if cellxgene-schema CLI validation fails PR @Zethson

• 🎨 Set up sources dynamically PR @sunnyosun

• 🎨 Do not check embedding in .validate PR @sunnyosun

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• ⬆️ Unpin tiledbsoma in CI PR @Koncopd

• ✨ PertCurator PR @sunnyosun

• ⬆️ Fix import PR @sunnyosun

• 🐛 Fix docs & import PR @falexwolf

• 🍱 Create the Biologic registry PR @falexwolf

• 📝 Fix pert nb PR @sunnyosun

• 🎨 Fix model relationships PR @sunnyosun

• ✨ Rename Treatment to Perturbation, add Donor registry, improve GeneticPerturbationSystem typing PR @Zethson

• 🎨 Fix link tables of Biosample and Techsample PR @sunnyosun

• 💚 Fix for 0.77.1 PR @falexwolf

• 🎨 Fix cellxgene-schema CLI PR @Zethson

• 📝 Edit search queries for public ontologies PR @Koncopd

• 🐛 Fix cell type curation PR @Zethson

• 📝 Adapt usecases to the new search PR @Koncopd

• ✨ Add script to add references to existing corpus PR @Zethson

• ✨ Add Person and Reference models PR @Zethson

• fix typo PR @Zethson

• 🎨 Re-create 1st migration PR @sunnyosun

• 🎨 Clean up PR @sunnyosun

• ⬆️ Clean up PR @sunnyosun

• 🎨 Clean up PR @sunnyosun

• ⬆️ Update lamindb PR @sunnyosun

• ⬆️ Update lamindb deps PR @sunnyosun

• 💚 Fix literal PR @sunnyosun

bionty

• 🩹 Add a fallback to UPath.synchronize if UPath.synchronize_to is not available PR @Koncopd

• 🎨 Make sure ensembl organism has a synonyms column PR @sunnyosun

• 📝 Add missing docstrings PR @Zethson

• ♻️ Adapt to renaming of UPath.synchronize() to UPath.synchronize_to() PR @Koncopd

• 🔈 Added loggings to Ontology.to_df() PR @namsaraeva

• ♻️ Remove pronto warning filters from init.py PR @namsaraeva