SoonΒΆ
hubΒΆ
π Add documentation to register a db server PR @fredericenard
π Improve on-prem data infrastructure setup documentation PR @fredericenard
π Update main landing page image PR @sunnyosun
β¨ Add
lamin.ai/explore
PR @falexwolf⨠Show projects for artifacts and transforms PR @sunnyosun
πΈ Indicate re-created artifacts for all runs PR @falexwolf
π Clean up Overview page PR @falexwolf
πΈ De-duplicate versions in the card boxes of the
Overview
page PR @falexwolfπ Fix display of dropdown behind
Schema
filter button onArtifacts
page PR @falexwolfπ Display transform keys PR @sunnyosun
π Create a more intuitive artifact page PR @chaichontat
Allow editing of transform name and attaching/detaching labels PR @awgaan
β¨ Dynamic code copy for R and Python PR @chaichontat
πΈ Improve speed and relevance of search PR @falexwolf
v0.31.0 PR @chaichontat
dbΒΆ
π Add an actual README PR @falexwolf
π Fix deletion of cloud transfer local instance PR @Zethson
β»οΈ More efficient tests cleanup PR @sunnyosun
β¨ Get CELLxGENE Schema & β¨ enable curation of Feature typed indices PR @Zethson
π Fix creation of a
Schema
withis_type=True
PR @sunnyosunπ Fix
index
hash calculation forSchema
PR @sunnyosunβ‘οΈ Implement performant synchronization for directories PR @Koncopd
β‘οΈ Implement performant synchronization for directories PR @Koncopd
usecasesΒΆ
π Update sc-imaging guide PR @namsaraeva
π Fix CI PR @sunnyosun
π Fix source PR @sunnyosun
β»οΈ No backward relationship on branch and space PR @falexwolf
π Polish scrna guide PR @falexwolf
β»οΈ Rename
Record
toDBRecord
PR @falexwolfβ»οΈ Rename
Record
toDBRecord
PR @falexwolfβ»οΈ Refactor spatialdata guide PR @falexwolf
β»οΈ Refactor
scrna
use case to leverageschema
-based curator and prepare lamindb release 1.5.0 PR @falexwolf⨠Added a Vitessce screenshot to the spatial guide PR @namsaraeva
β¬οΈ Update single-cell example notebooks to be compatible with most recent scportrait release PR @sophiamaedler
π Fix for lamindb 1.4 PR @falexwolf
π Fix CI for lamindb 1.4 PR @falexwolf
π¨ Make compound name TextField and fix related names PR @sunnyosun
π Move
ehrcuration.ipynb
from lamindb here to seed data typeEHR
PR @falexwolfπ Fix PR @falexwolf
π Move
Curator
tolamindb
PR @falexwolfπ Fix for 1.2.0 PR @falexwolf
π Add
PertCurator
notebook back PR @falexwolfπ Prettify and fix PR @falexwolf
π Move
PertCurator
intolamindb
PR @falexwolfπ Rename
artifact.biosamples
toartifact.clinicore_biosamples
PR @sunnyosunβ»οΈ Squash migrations PR @falexwolf
βͺοΈ Revert donor to ULabel PR @sunnyosun
π Map feature
donor_id
toDonor.name
PR @sunnyosunπ¨ Sort curated columns in
PertCurator
PR @sunnyosunπ Fix PR @falexwolf
π¨ Make sure
pert_
column categories are consistent PR @sunnyosunπ Deprecate the
--schema
argument oflamin init
in favor of--modules
PR @falexwolfβ¬οΈ Upgrade to lamindb 1.0a1 PR @falexwolf
π Migrate to lamindb 1.0 PR @falexwolf
π Migrate to lamindb 1.0 PR @falexwolf
π Migrate to lamindb 1.0 PR @falexwolf
β Fail CI if
cellxgene-schema
CLI validation fails PR @Zethsonπ¨ Set up sources dynamically PR @sunnyosun
π¨ Do not check embedding in .validate PR @sunnyosun
ποΈ Integrate
lnschema-core
intolamindb
PR @falexwolfποΈ Integrate
lnschema-core
intolamindb
PR @falexwolfποΈ Integrate
lnschema-core
intolamindb
PR @falexwolf⨠PertCurator PR @sunnyosun
β¬οΈ Fix import PR @sunnyosun
π Fix docs & import PR @falexwolf
π± Create the Biologic registry PR @falexwolf
π Fix pert nb PR @sunnyosun
π¨ Fix model relationships PR @sunnyosun
β¨ Rename
Treatment
toPerturbation
, addDonor
registry, improveGeneticPerturbationSystem
typing PR @Zethsonπ¨ Fix link tables of Biosample and Techsample PR @sunnyosun
π Fix for 0.77.1 PR @falexwolf
β¨ Add script to add references to existing corpus PR @Zethson
π¨ Re-create 1st migration PR @sunnyosun
π¨ Clean up PR @sunnyosun
β¬οΈ Clean up PR @sunnyosun
π¨ Clean up PR @sunnyosun
β¬οΈ Update lamindb PR @sunnyosun
β¬οΈ Update lamindb deps PR @sunnyosun
π Fix literal PR @sunnyosun
biontyΒΆ
π¨ Make sure ensembl organism has a
synonyms
column PR @sunnyosunβ»οΈ Adapt to renaming of
UPath.synchronize()
toUPath.synchronize_to()
PR @Koncopdπ Added loggings to
Ontology.to_df()
PR @namsaraevaβ»οΈ Remove pronto warning filters from init.py PR @namsaraeva