Soon

hub

db

• ⬆️ New uniprot organisms PR @sunnyosun

• ⬆️ Upgrade lamindb-setup PR @Koncopd

usecases

• Modify Artifact dataframe features in spatial3.md PR @falexwolf

• ♻️ Reflect overhauled lightning integration PR @falexwolf

• :bug: Make the cellxgene registration workflow more robust PR @ishitajain9717

• 💚 Fix CI PR @Koncopd

• 🚸 No need for a LaminDB instance just to query PR @falexwolf

• :bento: Support CELLxGENE 7.0.0 PR @Zethson

• 📝 Select the latest versions in docs PR @Koncopd

• 🎨 Fix formatting in the spatial guide PR @namsaraeva

• 💚 Remove scanpy pinning PR @namsaraeva

• 💚 Standardize against pinned Sources PR @Zethson

• 👷 Clean up repo PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• 📝 Update guides to reflect the overhauled lightning integration PR @Zethson

• 📝 Re-polish ontology guides PR @Zethson

• ♻️ Simplify and clarify usage of @ln.flow() PR @falexwolf

• 🐛 Fix _set_default_colors_for_categorical_obs for the spatial guide PR @namsaraeva

• 👷 Polish repo setup PR @falexwolf

• 🚚 Rename wetlab to pertdb PR @sunnyosun

• 📝 Polish 3 “Leverage ontologies” guides and the gene guide PR @sunnyosun

• 💚 Fix extras PR @Koncopd

• 💚 Fix CI PR @sunnyosun

• 🏗️ Use _dtype_str rather than dtype PR @falexwolf

• 💚 Use zarr_v2 extra PR @Koncopd

• 📝 Fix errors and outdated code in cellxgene guide PR @sunnyosun

• 📝 Overhaul the spatialdata guide PR @namsaraeva

• 💚 Fix CI PR @sunnyosun

• ♻️ Rename QueryDB to DB and arc_db to db PR @falexwolf

• 📝 Rename QueryDB to DB and cxg_db to db PR @falexwolf

• 📝 Simplify CELLxGENE guide PR @Zethson

• ♻️ New QueryDB syntax PR @Zethson

• ♻️ New QueryDB syntax PR @Zethson

• ♻️ Migrate to new QueryDB syntax PR @Zethson

• ♻️ Migrate to new QueryDB syntax PR @Zethson

• ✨ Adopt QueryDB PR @Zethson

• ✨ Adopt QueryDB for Arc & HubMAP PR @Zethson

• Update notebook link and dataset description in spatial4 PR @namsaraeva

• ♻️ Migrate scrna2 to schema-based curator and simplify heavily PR @falexwolf

• 🚚 Rename .using() to .connect() PR @falexwolf

• Fix pyarrow pin PR @Zethson

• 📌Pin pyarrow to 0.21.0 PR @Zethson

• Remove hide output from code cell in sc-imaging4 PR @namsaraeva

• ⬇️ Pin pyarrow PR @Zethson

• ⬇️ Pin pyarrow for spatial imaging PR @Zethson

• 💚 Fix test environments 2 PR @Koncopd

• 💚 Fix test environments PR @Koncopd

• 🔥 Remove analysis-flow use case PR @falexwolf

• 🚚 Rename df() to to_dataframe() PR @falexwolf

• 🚚 Rename .df() to .to_dataframe() PR @falexwolf

• ♻️ Move arc-virtual-cell-atlas and hubmap notebook here PR @falexwolf

• ♻️ Canonicalize import patterns PR @falexwolf

bionty

• New organisms of Protein: uniprot, 2026-01 PR @ishitajain9717

• 🍱 Uniprot 2026-01 human & mouse PR @sunnyosun

• 🐛 Fix duplicates in Ensembl prefixes for organisms PR @falexwolf

• ♻️ Clean up migrations PR @falexwolf

• ⚡️ Squash migrations PR @falexwolf

• 🗃️ Add created_on field for LaminDB v2.2 PR @falexwolf

• ⚡️ Lazily import pandas PR @falexwolf

• Update README PR @falexwolf