Soon

hub

• 📝 Add documentation to register a db server PR @fredericenard

• 📝 Improve on-prem data infrastructure setup documentation PR @fredericenard

• 💄 Update main landing page image PR @sunnyosun

• ✨ Add lamin.ai/explore PR @falexwolf

• ✨ Show projects for artifacts and transforms PR @sunnyosun

• 🚸 Indicate re-created artifacts for all runs PR @falexwolf

• 💄 Clean up Overview page PR @falexwolf

• 🚸 De-duplicate versions in the card boxes of the Overview page PR @falexwolf

• ✨ Group ulabels by type PR @awgaan

• 🐛 Fix display of dropdown behind Schema filter button on Artifacts page PR @falexwolf

• 💄 Display transform keys PR @sunnyosun

• 💄 Create a more intuitive artifact page PR @chaichontat

• Allow editing of transform name and attaching/detaching labels PR @awgaan

• ✨ Dynamic code copy for R and Python PR @chaichontat

• 🚸 Improve speed and relevance of search PR @falexwolf

• v0.31.0 PR @chaichontat

db

• ♻️ Refactor how to deal with parallel storage creation PR @falexwolf

• ✅ Test simplify link tables RLS PR @Koncopd

• 🚸 Improve similar names found message PR @Zethson

• ✅ Test fine-grained access for single records PR @Koncopd

• ✅ Adapt local-hub tests to caching RLS PR @Koncopd

• ✅ Testing for cache spaces for RLS PR @Koncopd

• 🐛 Fix parallel artifact registration with hub storage PR @Koncopd

• 🎨 Support nested cat dtypes PR @sunnyosun

• ✨ Allow to re-connect in the same process PR @Koncopd

• 🚸 Do not write instance settings on connect by default PR @Koncopd

• ♻️ Do not write instance settings on connect by default PR @Koncopd

• ♻️ Do not write instance settings on connect by default PR @Koncopd

• ✅ Fix testing user table in test_permissions PR @Koncopd

• 🎨 Allow passing _skip_validation to Feature PR @sunnyosun

• 🩹 Avoid init_storage call in check_path_in_existing_storage PR @Koncopd

• 💚 Proper cleanup for test-init-no-writes PR @Koncopd

• 🔊 Correct treatment of carriage returns in logs PR @Koncopd

• 🐛 Clean delete of storage locations, transparent referencing of storage locations PR @falexwolf

• 🐛 Take into account that a storage location might be managed by an instance that’s not on the hub PR @falexwolf

• 📝 Improve storage docs PR @falexwolf

• 🚸 Enable users to more conveniently create storage locations, make storage management more transparent PR @falexwolf

• ♻️ Simplify storage marking & storage-from-hub retrieval PR @falexwolf

• ♻️ Refactor storage registration PR @falexwolf

• 👷 Clean up test instance in hub after failed re-initialization run PR @falexwolf

• ♻️ Refactor storage deletion PR @falexwolf

• ♻️ Refactor storage deletion PR @falexwolf

• ♻️ Refactor FeatureManager PR @falexwolf

• 🔥 Remove long-deprecated ln.setup.load() and to-lamindb-v1 migration logic PR @falexwolf

• ♻️ Explicitly set _write_settings=True in lamin connect PR @Koncopd

• 🐛 Have transfer comply with settings.annotation.n_max_records and fix a bug related to repeated schema transfer PR @falexwolf

• Improve lookup docstring PR @sunnyosun

• 🚸 Add keep with default “first” to Lookup PR @sunnyosun

• 🔊 Log side-effects PR @Koncopd

• 🎨 Batch save PR @sunnyosun

• ✨ Add settings.is_connected to check if the current instance is properly connected for use PR @Koncopd

• 🐛 Fix transfer from instance with superset of module to instance with subset of modules in presence of schema-annotation in the additional modules PR @falexwolf

• 🚸 Better message for ModuleWasntConfigured PR @falexwolf

• ♻️ Define all exceptions in lamindb_setup.errors PR @falexwolf

• 🚸 Leverage panderas lazy validation PR @falexwolf

• 🚸 Expose overwrite_versions PR @falexwolf

• 🚸 Hide artifacts with kind __lamindb_run__ PR @falexwolf

• ♻️ Allow passing run_id to Artifact constructor PR @falexwolf

• 🎨 Refactor TiledbsomaExperimentCurator related code PR @Zethson

• 🐛 Fix call_with_fallback in case fallback is needed PR @Koncopd

• ✅ Expand tests for sheets PR @falexwolf

• 🏷️ BaseSQLRecord.save should return self type PR @ap–

• 🏷️ Mark as py.typed to allow mypy inspection PR @ap–

• ♻️ Enable passing branch and space everywhere PR @falexwolf

usecases

• 💚 Fix source PR @sunnyosun

• ♻️ No backward relationship on branch and space PR @falexwolf

• 🎨 Run all on dispatch & fix CI PR @Zethson

• 💄 Polish scrna guide PR @falexwolf

• ♻️ Rename Record to DBRecord PR @falexwolf

• ♻️ Rename Record to DBRecord PR @falexwolf

• ♻️ Refactor spatialdata guide PR @falexwolf

• ♻️ Refactor scrna use case to leverage schema-based curator and prepare lamindb release 1.5.0 PR @falexwolf

• ✨ Added a Vitessce screenshot to the spatial guide PR @namsaraeva

• ⬆️ Update single-cell example notebooks to be compatible with most recent scportrait release PR @sophiamaedler

• 💚 Fix for lamindb 1.4 PR @falexwolf

• 💚 Fix CI for lamindb 1.4 PR @falexwolf

• ✨ Add mlflow example PR @Zethson

• ✨ New spatial data guide PR @Zethson

• ✨ By data-type - imaging PR @Zethson

• 🎨 Polish nbs PR @Zethson

• 🎨 Make compound name TextField and fix related names PR @sunnyosun

• 🚚 Move ehrcuration.ipynb from lamindb here to seed data type EHR PR @falexwolf

• 💚 Fix PR @falexwolf

• 🚚 Move Curator to lamindb PR @falexwolf

• ✏️ Use key instead of description PR @Zethson

• 📝 Fix for 1.2.0 PR @falexwolf

• 📝 Add PertCurator notebook back PR @falexwolf

• 💚 Prettify and fix PR @falexwolf

• ✨ Add finished_at PR @Zethson

• 🚚 Move PertCurator into lamindb PR @falexwolf

• 🚚 Rename artifact.biosamples to artifact.clinicore_biosamples PR @sunnyosun

• ♻️ Squash migrations PR @falexwolf

• ✨ Upgrade ruff and pre-commit config PR @Zethson

• ⏪️ Revert donor to ULabel PR @sunnyosun

• 💚 Map feature donor_id to Donor.name PR @sunnyosun

• 🎨 Sort curated columns in PertCurator PR @sunnyosun

• 🎨 Remove lnschema-core PR @Zethson

• 💚 Fix PR @falexwolf

• 🎨 Make sure pert_ column categories are consistent PR @sunnyosun

• 🚚 Deprecate the --schema argument of lamin init in favor of --modules PR @falexwolf

• ⬆️ Upgrade to lamindb 1.0a1 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🚚 Migrate to lamindb 1.0 PR @falexwolf

• 🐛 Fix default values PR @Zethson

• ✅ Fail CI if cellxgene-schema CLI validation fails PR @Zethson

• 🎨 Set up sources dynamically PR @sunnyosun

• 🎨 Do not check embedding in .validate PR @sunnyosun

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• 🏗️ Integrate lnschema-core into lamindb PR @falexwolf

• ⬆️ Unpin tiledbsoma in CI PR @Koncopd

• ✨ PertCurator PR @sunnyosun

• ⬆️ Fix import PR @sunnyosun

• 🐛 Fix docs & import PR @falexwolf

• 🍱 Create the Biologic registry PR @falexwolf

• 📝 Fix pert nb PR @sunnyosun

• 🎨 Fix model relationships PR @sunnyosun

• ✨ Rename Treatment to Perturbation, add Donor registry, improve GeneticPerturbationSystem typing PR @Zethson

• 🎨 Fix link tables of Biosample and Techsample PR @sunnyosun

• 💚 Fix for 0.77.1 PR @falexwolf

• 🎨 Fix cellxgene-schema CLI PR @Zethson

• 📝 Edit search queries for public ontologies PR @Koncopd

• 🐛 Fix cell type curation PR @Zethson

• 📝 Adapt usecases to the new search PR @Koncopd

• ✨ Add script to add references to existing corpus PR @Zethson

• ✨ Add Person and Reference models PR @Zethson

• fix typo PR @Zethson

• 🎨 Re-create 1st migration PR @sunnyosun

• 🎨 Clean up PR @sunnyosun

• ⬆️ Clean up PR @sunnyosun

• 🎨 Clean up PR @sunnyosun

• ⬆️ Update lamindb PR @sunnyosun

• ⬆️ Update lamindb deps PR @sunnyosun

• 💚 Fix literal PR @sunnyosun

bionty

• 🎨 Fix typo PR @Zethson

• 🚸 Ignore Pronto Warnings on import PR @Zethson

• ✨ Add new ontology versions & 🐛 fix registration bugs PR @Zethson

• 🎨 Ignore test warnings PR @Zethson

• 🎨 Use ln.save instead of bulk_create PR @sunnyosun

• ✨ Add Mondo 2025-06-03 PR @Zethson

Fixes

• 🐛 Fix import_source with non-existing parents in the reference PR @namsaraeva