Soon

hub

db

• :memo: README v5.5: Prettified LaminDB schematic PR @falexwolf

• 🚸 Refactor plan saving to strip TODOs from description PR @falexwolf

• 👷 Run tests also from lamin-cli, not only from lamindb PR @falexwolf

• ⬆️ Upgrade lamindb-setup PR @Koncopd

• 🐛 Enable deleting mark files in delete_instance and use access_token depending in client PR @Koncopd

• 📝 Document agent plan tracking also in README and ln.track() API reference PR @falexwolf

• 🍱 Support CELLxGENE 7.0.0 PR @Zethson

• 🐛 Fix hostdb for features getitem PR @sunnyosun

• 🔊 Adapt logging to refreshable credentials PR @Koncopd

• ⬆️ Bump lamin-utils PR @sunnyosun

• 👷 Refactor package testing setup with lamin_lambda_utils PR @falexwolf

• ✨ Refresh federated AWS credentials on the botocore level PR @Koncopd

• ♻️ Refactor migration logic PR @falexwolf

• ✨ Use refreshable credentials PR @Koncopd

• 💚 Do not execute the new block in the track guide PR @falexwolf

• 📝 Add Change Management section to README and Agent Plans section to track guide PR @falexwolf

usecases

• :bento: Support CELLxGENE 7.0.0 PR @Zethson

• 📝 Select the latest versions in docs PR @Koncopd

• 🎨 Fix formatting in the spatial guide PR @namsaraeva

• 💚 Remove scanpy pinning PR @namsaraeva

• 💚 Standardize against pinned Sources PR @Zethson

• 👷 Clean up repo PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• 📝 Update guides to reflect the overhauled lightning integration PR @Zethson

• 📝 Re-polish ontology guides PR @Zethson

• ♻️ Simplify and clarify usage of @ln.flow() PR @falexwolf

• 🐛 Fix _set_default_colors_for_categorical_obs for the spatial guide PR @namsaraeva

• 👷 Polish repo setup PR @falexwolf

• 🚚 Rename wetlab to pertdb PR @sunnyosun

• 📝 Polish 3 “Leverage ontologies” guides and the gene guide PR @sunnyosun

• 💚 Fix extras PR @Koncopd

• 💚 Fix CI PR @sunnyosun

• 🏗️ Use _dtype_str rather than dtype PR @falexwolf

• 💚 Use zarr_v2 extra PR @Koncopd

• 📝 Fix errors and outdated code in cellxgene guide PR @sunnyosun

• 📝 Overhaul the spatialdata guide PR @namsaraeva

• 💚 Fix CI PR @sunnyosun

• ♻️ Rename QueryDB to DB and arc_db to db PR @falexwolf

• 📝 Rename QueryDB to DB and cxg_db to db PR @falexwolf

• 📝 Simplify CELLxGENE guide PR @Zethson

• ♻️ New QueryDB syntax PR @Zethson

• ♻️ New QueryDB syntax PR @Zethson

• ♻️ Migrate to new QueryDB syntax PR @Zethson

• ♻️ Migrate to new QueryDB syntax PR @Zethson

• ✨ Adopt QueryDB PR @Zethson

• ✨ Adopt QueryDB for Arc & HubMAP PR @Zethson

• Update notebook link and dataset description in spatial4 PR @namsaraeva

• ♻️ Migrate scrna2 to schema-based curator and simplify heavily PR @falexwolf

• 🚚 Rename .using() to .connect() PR @falexwolf

• Fix pyarrow pin PR @Zethson

• 📌Pin pyarrow to 0.21.0 PR @Zethson

• Remove hide output from code cell in sc-imaging4 PR @namsaraeva

• ⬇️ Pin pyarrow PR @Zethson

• ⬇️ Pin pyarrow for spatial imaging PR @Zethson

• 💚 Fix test environments 2 PR @Koncopd

• 💚 Fix test environments PR @Koncopd

• 🔥 Remove analysis-flow use case PR @falexwolf

• 🚚 Rename df() to to_dataframe() PR @falexwolf

• 🚚 Rename .df() to .to_dataframe() PR @falexwolf

• ♻️ Move arc-virtual-cell-atlas and hubmap notebook here PR @falexwolf

• ♻️ Canonicalize import patterns PR @falexwolf

bionty

• ♻️ Clean up migrations PR @falexwolf

• ⚡️ Squash migrations PR @falexwolf

• 🗃️ Add created_on field for LaminDB v2.2 PR @falexwolf

• ⚡️ Lazily import pandas PR @falexwolf

• Update README PR @falexwolf