## lamindb.examples

Examples.

| --- | --- |
| "schemas" | Example schemas. |
| --- | --- |
| "datasets" | Example datasets. |
| --- | --- |
| "cellxgen | CELLxGENE utilities. |
| e" |
| --- | --- |
| "croissan | Examples for MLCommons Croissant files, which are used to store metadata about datasets. |
| t" |
| --- | --- |
| "mlflow" | Examples and utilities for Mlflow. |
| --- | --- |
| "wandb" | Examples and utilities for Weights & Biases. |
| --- | --- |

* lamindb.examples.schemas

  * "valid_features()"

  * "anndata_ensembl_gene_ids_and_valid_features_in_obs()"

* lamindb.examples.datasets

  * The mini immuno dataset

 * lamindb.examples.datasets.mini_immuno

 * Datasets

 * "get_dataset1()"

 * "get_dataset2()"

 * Schemas

 * "define_features_labels()"

 * "define_mini_immuno_schema_flexible()"

 * Utilities

 * "save_mini_immuno_datasets()"

  * Small in-memory datasets

 * "anndata_with_obs()"

  * Files

 * "file_fcs()"

 * "file_fcs_alpert19()"

 * "file_tsv_rnaseq_nfcore_salmon_merged_gene_counts()"

 * "file_jpg_paradisi05()"

 * "file_tiff_suo22()"

 * "file_fastq()"

 * "file_bam()"

 * "file_mini_csv()"

  * Directories

 * "dir_scrnaseq_cellranger()"

 * "dir_iris_images()"

  * Dictionary, Dataframe, AnnData, MuData, SpatialData

 * "dict_cellxgene_uns()"

 * "df_iris()"

 * "df_iris_in_meter()"

 * "df_iris_in_meter_study1()"

 * "df_iris_in_meter_study2()"

 * "anndata_mouse_sc_lymph_node()"

 * "anndata_human_immune_cells()"

 * "anndata_pbmc68k_reduced()"

 * "anndata_file_pbmc68k_test()"

 * "anndata_pbmc3k_processed()"

 * "anndata_suo22_Visium10X()"

 * "anndata_visium_mouse_cellxgene()"

 * "mudata_papalexi21_subset()"

 * "schmidt22_crispra_gws_IFNG()"

 * "schmidt22_perturbseq()"

 * "spatialdata_blobs()"

  * Other

 * "fake_bio_notebook_titles()"

* lamindb.examples.cellxgene

  * "save_cellxgene_defaults()"

  * "create_cellxgene_schema()"

* lamindb.examples.croissant

  * "mini_immuno()"

* lamindb.examples.mlflow

  * "save_mlflow_features()"

* lamindb.examples.wandb

  * "save_wandb_features()"