## Changelog 2022

Note:

 Get notified by watching releases for git repositories: lamindb,
  nbproject and bionty. For other years, see: 2026 · 2025 · 2024 ·
  2023

# "nbproject"

Light-weight Jupyter notebook tracker.

GitHub: github.com/laminlabs/nbproject

| --- | --- | --- | --- | --- |
| Name | PR | Developer | Date | Version |
| ====================== | ====================== | ====================== | ====================== | ====================== |
| ⚡️ Do nothing with | 247 | Koncopd | 2022-11-14 |
| ipylab when not in |
| ipython |
| --- | --- | --- | --- | --- |
| 🚸 Only init | 246 | falexwolf | 2022-11-13 | 0.8.1 |
| "JupyterFrontEnd" if |
| run within ipython |
| --- | --- | --- | --- | --- |
| 🚸 Do no longer | 244 | falexwolf | 2022-11-12 | 0.8.0 |
| auto-bump "version" |
| upon "publish()" |
| Breaking |
| --- | --- | --- | --- | --- |
| 🚚 Rename "version" | 243 | falexwolf | 2022-11-12 |
| 'draft' to '0' |
| Breaking |
| --- | --- | --- | --- | --- |
| 💄 Fix PyPI badge | 242 | falexwolf | 2022-10-24 |
| color & change badge |
| order |
| --- | --- | --- | --- | --- |
| ♻️ Read user name | 239 | falexwolf | 2022-10-10 | 0.7.0 |
| from settings |
| --- | --- | --- | --- | --- |
| ✨ Add "author" | 238 | Koncopd | 2022-10-10 | 0.5.5 |
| field and a few |
| fixes |
| --- | --- | --- | --- | --- |
| ♻️ Refactor publish | 237 | falexwolf | 2022-10-07 | 0.5.4 |
| --- | --- | --- | --- | --- |
| ✨ Allow setting | 236 | Koncopd | 2022-09-30 |
| nbproject "env" via |
| environment variable |
| --- | --- | --- | --- | --- |
| 📝 Expand some | 235 | Koncopd | 2022-09-30 |
| docstrings |
| --- | --- | --- | --- | --- |
| 💄 Strip newline | 234 | falexwolf | 2022-09-24 | 0.5.3 |
| from title |
| --- | --- | --- | --- | --- |
| 🚚 Rename tutorials | 230 | falexwolf | 2022-09-05 |
| to guide, guides to |
| FAQ |
| --- | --- | --- | --- | --- |
| 📝 Add GitHub stars | 229 | falexwolf | 2022-08-30 | 0.5.2 |
| to docs |
| --- | --- | --- | --- | --- |
| 🩹 Identify VS Code | 228 | Koncopd | 2022-08-30 |
| as an environment |
| --- | --- | --- | --- | --- |
| 🎨 Strip quickstart | 227 | falexwolf | 2022-08-29 |
| output, upgrade |
| "nbproject_test" |
| --- | --- | --- | --- | --- |
| 📝 Make a setup | 226 | falexwolf | 2022-08-29 |
| guide |
| --- | --- | --- | --- | --- |
| 📝 Installation | 225 | Koncopd | 2022-08-28 | 0.5.1 |
| instructions and |
| other things |
| --- | --- | --- | --- | --- |
| 🚸 Additional | 220 | Koncopd | 2022-08-25 |
| warnings and safety |
| features |
| --- | --- | --- | --- | --- |
| ✨ Add interactivity | 219 | Koncopd | 2022-08-16 | 0.5.0 |
| for classic jupyter |
| notebooks |
| --- | --- | --- | --- | --- |
| ♻️ Clean up code | 215 | Koncopd | 2022-08-07 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to logger | 212 | falexwolf | 2022-07-24 |
| 0.1.1 & polish |
| "quickstart" |
| --- | --- | --- | --- | --- |
| 🩹 Safer interactive | 211 | Koncopd | 2022-07-23 |
| header update on |
| initialization |
| --- | --- | --- | --- | --- |
| 🔥 Switched logger | 210 | sunnyosun | 2022-07-23 |
| to use |
| "lamin_logger" |
| --- | --- | --- | --- | --- |
| 📝 Polish "basic- | 209 | falexwolf | 2022-07-23 |
| metadata" and |
| "update-metadata" |
| guide |
| --- | --- | --- | --- | --- |
| 📝 Add gif to | 208 | falexwolf | 2022-07-23 |
| quickstart |
| --- | --- | --- | --- | --- |
| ♻️ Refactor exposure | 206 | falexwolf | 2022-07-23 |
| of |
| "infer_pypackages" |
| --- | --- | --- | --- | --- |
| 🚸 Add logging to | 204 | Koncopd | 2022-07-20 | 0.4.5 |
| "notebook_path" |
| --- | --- | --- | --- | --- |
| 🚸 Better logging on | 203 | falexwolf | 2022-07-20 | 0.4.4 |
| no-title error |
| --- | --- | --- | --- | --- |
| 💄 Allow chaining in | 200 | falexwolf | 2022-07-19 |
| "add_pypackages" and |
| prettify logging |
| message |
| --- | --- | --- | --- | --- |
| ♻️ Add return value | 199 | falexwolf | 2022-07-19 | 0.4.3 |
| for "set_version" |
| --- | --- | --- | --- | --- |
| ♻️ Refactor and test | 198 | falexwolf | 2022-07-19 | 0.4.2 |
| "set_version" |
| --- | --- | --- | --- | --- |
| 🚸 Do not raise | 196 | falexwolf | 2022-07-19 | 0.4.1 |
| error upon no-title, |
| return code |
| --- | --- | --- | --- | --- |
| 💄 Added ✅ for | 197 | sunnyosun | 2022-07-19 |
| success logging |
| --- | --- | --- | --- | --- |
| 💄 Prettified | 195 | sunnyosun | 2022-07-19 |
| logging |
| --- | --- | --- | --- | --- |
| 🚸 Show table on | 194 | Koncopd | 2022-07-18 |
| initialization, ask |
| to publish if cells |
| not consecutive |
| --- | --- | --- | --- | --- |
| 💄 Logging with | 193 | sunnyosun | 2022-07-18 |
| icons |
| --- | --- | --- | --- | --- |
| 🚸 Small changes to | 190 | Koncopd | 2022-07-18 |
| header, |
| "add_pypackages" |
| infers versions |
| --- | --- | --- | --- | --- |
| 💄 Polish docs | 191 | falexwolf | 2022-07-18 | 0.4.0 |
| --- | --- | --- | --- | --- |
| ✨ Allow passing | 188 | falexwolf | 2022-07-18 |
| "pypackage" to |
| "header()", add |
| consistency checks, |
| and logs for how to |
| update metadata |
| --- | --- | --- | --- | --- |
| 💚 Fix the 3.7 & 3.8 | 186 | Koncopd | 2022-07-18 |
| tests |
| --- | --- | --- | --- | --- |
| 📝 Simplify guide | 185 | falexwolf | 2022-07-17 |
| --- | --- | --- | --- | --- |
| ✨ Add a parent | 183 | falexwolf | 2022-07-17 |
| field to metadata |
| and "header()" |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 181 | falexwolf | 2022-07-17 |
| "dependency" to |
| "pypackage" |
| --- | --- | --- | --- | --- |
| 💄 Simplify | 180 | falexwolf | 2022-07-17 | 0.3.2 |
| pypackage display & |
| make version the 2nd |
| field to be |
| displayed |
| --- | --- | --- | --- | --- |
| 👷 Update CI with | 179 | falexwolf | 2022-07-17 |
| pyversions, update |
| readme & docs with |
| doi & clean-up |
| --- | --- | --- | --- | --- |
| ✨ "publish()" and | 178 | Koncopd | 2022-07-17 |
| "test_cli" update |
| --- | --- | --- | --- | --- |
| ♻️ Refactored | 177 | Koncopd | 2022-07-17 |
| metadata display |
| --- | --- | --- | --- | --- |
| ♻️ Small changes for | 175 | Koncopd | 2022-07-17 |
| "meta" |
| --- | --- | --- | --- | --- |
| 🚸 More intuitive | 173 | falexwolf | 2022-07-16 |
| auto-lookup and API |
| reference |
| --- | --- | --- | --- | --- |
| 👷 Introduce | 171 | falexwolf | 2022-07-16 | 0.3.1 |
| compatibility with |
| Python 3.7 |
| --- | --- | --- | --- | --- |
| ♻️ Refactor | 167 | falexwolf | 2022-07-16 | 0.3.0 |
| "last_cell" check & |
| "consecutiveness" |
| check in "publish()" |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 166 | falexwolf | 2022-07-16 |
| "integrity" to |
| "consecutiveness" |
| --- | --- | --- | --- | --- |
| 🚸 Remove complexity | 164 | falexwolf | 2022-07-15 |
| of Jupyter Lab |
| interaction |
| --- | --- | --- | --- | --- |
| 🚸 Indent JSON just | 163 | falexwolf | 2022-07-15 |
| as editors do |
| --- | --- | --- | --- | --- |
| 🚸 Raise error upon | 161 | falexwolf | 2022-07-14 | 0.2.3 |
| publishing notebook |
| without title |
| --- | --- | --- | --- | --- |
| 🚸 Remove execution | 159 | falexwolf | 2022-07-14 |
| of cells after |
| metadata write |
| --- | --- | --- | --- | --- |
| 🚸 Add an | 154 | Koncopd | 2022-07-13 | 0.2.2 |
| uninitialized |
| project for |
| "test_cli" and a |
| small fix to |
| "header" |
| --- | --- | --- | --- | --- |
| 🚸 Add safety | 153 | falexwolf | 2022-07-13 |
| measures, better |
| documentation & |
| logging & tests |
| --- | --- | --- | --- | --- |
| 🚸 Clearer logging | 152 | falexwolf | 2022-07-13 |
| output upon init in |
| VS Code and Classic |
| Notebook |
| --- | --- | --- | --- | --- |
| 🔥 Remove | 151 | falexwolf | 2022-07-13 |
| automatically |
| calling "header()" |
| upon import |
| --- | --- | --- | --- | --- |
| ♻️ Enable passing | 148 | falexwolf | 2022-07-12 | 0.2.1 |
| the calling_code |
| statement to publish |
| --- | --- | --- | --- | --- |
| ✨ Add last cell | 143 | Koncopd | 2022-07-11 |
| check to publish |
| --- | --- | --- | --- | --- |
| 📝 Add header() call | 141 | falexwolf | 2022-07-11 | 0.2.0 |
| to every notebook |
| --- | --- | --- | --- | --- |
| 🚸 Add | 140 | falexwolf | 2022-07-11 |
| "i_confirm_i_saved" |
| arg to "publish()" |
| for usage outside |
| Jupyter Lab |
| --- | --- | --- | --- | --- |
| 🚚 Migrated test | 138 | falexwolf | 2022-07-11 |
| submodule to |
| "nbproject_test" |
| --- | --- | --- | --- | --- |
| 🚚 Remove mention of | 137 | falexwolf | 2022-07-11 |
| footer, lock in |
| publish |
| --- | --- | --- | --- | --- |
| 📝 Add a nutshell | 135 | falexwolf | 2022-07-10 |
| tutorial to demo |
| canonical workflow |
| --- | --- | --- | --- | --- |
| 🚸 Turn "header()" | 133 | falexwolf | 2022-07-10 |
| from pseudo-module |
| into function, |
| remove "Header" |
| class |
| --- | --- | --- | --- | --- |
| ✅ Improve coverage | 130 | Koncopd | 2022-07-10 |
| --- | --- | --- | --- | --- |
| 🚸 More intuitive | 126 | falexwolf | 2022-07-09 |
| API for updating |
| pypackage store and |
| writing it to file |
| --- | --- | --- | --- | --- |
| ✨ Add a more | 125 | Koncopd | 2022-07-09 |
| convenient way of |
| updating the |
| pypackage store |
| --- | --- | --- | --- | --- |
| 💄 Prettify logging | 124 | falexwolf | 2022-07-09 |
| during testing |
| --- | --- | --- | --- | --- |
| 📝 Add a published | 120 | falexwolf | 2022-07-05 |
| notebook |
| --- | --- | --- | --- | --- |
| ✅ Improve notebook | 116 | Koncopd | 2022-07-03 | 0.1.6 |
| testing API |
| --- | --- | --- | --- | --- |
| ✨ Publish notebooks | 112 | Koncopd | 2022-07-01 |
| from the CLI |
| --- | --- | --- | --- | --- |
| 💄 Avoid non- | 114 | falexwolf | 2022-07-01 | 0.1.5 |
| JupyterLab env |
| logging messages in |
| CI env |
| --- | --- | --- | --- | --- |
| ✅ Execute notebooks | 113 | falexwolf | 2022-07-01 |
| in order of index |
| --- | --- | --- | --- | --- |
| 💄 More compact | 111 | falexwolf | 2022-07-01 | 0.1.4 |
| logging and other |
| small fixes |
| --- | --- | --- | --- | --- |
| ♻️ Refactor meta and | 110 | Koncopd | 2022-07-01 |
| header |
| --- | --- | --- | --- | --- |
| 🚸 Polish publishing | commit | falexwolf | 2022-07-01 | 0.1.3 |
| experience |
| --- | --- | --- | --- | --- |
| 🚸 Improve user | 109 | falexwolf | 2022-07-01 | 0.1.2 |
| experience during |
| publishing |
| --- | --- | --- | --- | --- |
| ✨ Add VS Code | 107 | falexwolf | 2022-06-29 | 0.1.1 |
| integration |
| --- | --- | --- | --- | --- |
| ✨ Implement the | 106 | Koncopd | 2022-06-29 |
| publish function |
| --- | --- | --- | --- | --- |
| 📝 Add proper guide | 105 | falexwolf | 2022-06-29 |
| --- | --- | --- | --- | --- |
| 📝 Prototype the | 103 | falexwolf | 2022-06-29 |
| "nbproject.publish" |
| workflow |
| --- | --- | --- | --- | --- |
| ✨ Take into account | 104 | Koncopd | 2022-06-29 |
| packages from store |
| for live pypackages |
| --- | --- | --- | --- | --- |
| ✨ Add field | 102 | falexwolf | 2022-06-29 |
| "version" and |
| display live |
| pypackages in header |
| --- | --- | --- | --- | --- |
| 👷 Update coverage | 101 | falexwolf | 2022-06-26 |
| CI setup |
| --- | --- | --- | --- | --- |
| 👷 Integrate Codecov | 100 | sunnyosun | 2022-06-26 |
| to CI |
| --- | --- | --- | --- | --- |
| 📝 Re-organize API | 97 | falexwolf | 2022-06-24 | 0.1.0 |
| documentation and |
| clean up faq |
| --- | --- | --- | --- | --- |
| ♻️ Restructure dev | 93 | Koncopd | 2022-06-23 | 0.1a3 |
| submodule |
| --- | --- | --- | --- | --- |
| 🐛 Fix the case when | 94 | Koncopd | 2022-06-23 | 0.1a2 |
| a notebook filename |
| is specified |
| --- | --- | --- | --- | --- |
| ♻️ Re-design package | 90 | Koncopd | 2022-06-21 | 0.1a1 |
| and introduce large |
| parts of the API |
| --- | --- | --- | --- | --- |
| 🧑‍💻 Make CLI "-- | 87 | Koncopd | 2022-06-12 |
| deps" infer versions |
| by default |
| --- | --- | --- | --- | --- |
| 🩹 Always display | 84 | Koncopd | 2022-06-10 |
| pypackages pinned in |
| the metadata |
| --- | --- | --- | --- | --- |
| 💚 Remove server | 83 | Koncopd | 2022-06-09 |
| initialization from |
| tests |
| --- | --- | --- | --- | --- |
| 🏗️ Always infer & | 80 | falexwolf | 2022-06-08 | 0.0.9 |
| display pypackages |
| --- | --- | --- | --- | --- |
| 🩹 Fix "meta.title" | 79 | falexwolf | 2022-06-08 |
| formatting |
| --- | --- | --- | --- | --- |
| ✨ Expose title in | 77 | falexwolf | 2022-06-08 | 0.0.8 |
| "nbproject.meta" & |
| refactor to loading |
| dynamically |
| --- | --- | --- | --- | --- |
| ♻️ Rename "meta.uid" | 75 | falexwolf | 2022-06-08 |
| to "meta.id" |
| --- | --- | --- | --- | --- |
| ✨ Infer pypackages | 65 | Koncopd | 2022-06-07 |
| on header import |
| --- | --- | --- | --- | --- |
| 🏗️ Access metadata | 59 | falexwolf | 2022-06-06 |
| through API |
| --- | --- | --- | --- | --- |
| ✨ Upon interactive | 57 | falexwolf | 2022-06-04 |
| init, auto-restart & |
| run |
| --- | --- | --- | --- | --- |
| ♻️ Replace nbformat | 50 | Koncopd | 2022-05-31 |
| with orjson |
| everywhere |
| --- | --- | --- | --- | --- |
| ⚡ Improve runtime | 47 | Koncopd | 2022-05-23 |
| for |
| "nbproject.header" |
| --- | --- | --- | --- | --- |
| ♻️ Proper treatment | 48 | Koncopd | 2022-05-23 |
| of jupyter magic |
| commands |
| --- | --- | --- | --- | --- |
| 💚 Safer pytest run | 41 | Koncopd | 2022-05-15 |
| --- | --- | --- | --- | --- |
| ✨ Add pypackages | 26 | Koncopd | 2022-05-13 |
| management |
| --- | --- | --- | --- | --- |
| ✨ Project | 21 | Koncopd | 2022-04-29 |
| initialization with |
| CLI |
| --- | --- | --- | --- | --- |
| 🎨 Move all jupyter | 19 | Koncopd | 2022-04-18 |
| related |
| functionality to one |
| file |
| --- | --- | --- | --- | --- |
| 🏗️ Metadata-aware | 9 | Koncopd | 2022-04-07 |
| tests |
| --- | --- | --- | --- | --- |
| 🏗️  Metadata-aware | 9 | Koncopd | 2022-04-07 |
| tests (take 1) |
| --- | --- | --- | --- | --- |
| ✨ Add "time_init" & | 6 | falexwolf | 2022-03-23 |
| "time_edit" fields |
| --- | --- | --- | --- | --- |
| 💄 Display only 4 | 5 | falexwolf | 2022-03-23 |
| digits, use |
| pydantic, autodetect |
| filename |
| --- | --- | --- | --- | --- |
| 📝 Update readme | 2 | falexwolf | 2022-03-23 |
| --- | --- | --- | --- | --- |

# "bionty"

Access & manage biological ontologies.

GitHub: github.com/laminlabs/bionty

| --- | --- | --- | --- | --- |
| Name | PR | Developer | Date | Version |
| ====================== | ====================== | ====================== | ====================== | ====================== |
| 🐛 Fixed id=name bug | 157 | sunnyosun | 2022-12-09 | 0.5.7 |
| --- | --- | --- | --- | --- |
| ♻️ Refactor version | 156 | sunnyosun | 2022-12-08 | 0.5.6 |
| files |
| --- | --- | --- | --- | --- |
| ✨ Added | 155 | sunnyosun | 2022-12-01 |
| ontology_info |
| --- | --- | --- | --- | --- |
| ✨ Add readout to | 153 | sunnyosun | 2022-11-24 | 0.5.5 |
| lookup |
| --- | --- | --- | --- | --- |
| ✨ Write most recent | 152 | sunnyosun | 2022-11-23 |
| versions to |
| "_current.yaml" |
| --- | --- | --- | --- | --- |
| 🎨 Fetch the latest | 151 | sunnyosun | 2022-11-22 |
| ontology from ols |
| --- | --- | --- | --- | --- |
| 🚚 Moved readout | 150 | sunnyosun | 2022-11-19 |
| from bioreadout into |
| bionty |
| --- | --- | --- | --- | --- |
| ✨ Added a local | 149 | sunnyosun | 2022-11-18 |
| versions tracking |
| file |
| --- | --- | --- | --- | --- |
| 🐛 Fixed column id | 148 | sunnyosun | 2022-11-16 | 0.5.4 |
| in curate |
| --- | --- | --- | --- | --- |
| 🩹 Removed prefix in | 147 | sunnyosun | 2022-11-15 | 0.5.3 |
| ontology df |
| --- | --- | --- | --- | --- |
| 🎨 Default id to | 146 | sunnyosun | 2022-11-15 |
| ontology_id |
| --- | --- | --- | --- | --- |
| 🚚 Rename id to | 145 | sunnyosun | 2022-11-11 | 0.5.2 |
| ontology_id for |
| ontology df |
| --- | --- | --- | --- | --- |
| ⚡ Cache id and name | 144 | sunnyosun | 2022-11-10 |
| for ontology |
| --- | --- | --- | --- | --- |
| 🎨 Simplified | 143 | sunnyosun | 2022-11-10 |
| ontology |
| --- | --- | --- | --- | --- |
| 🐛 Fixed bug in | 142 | sunnyosun | 2022-11-10 |
| tissue id |
| --- | --- | --- | --- | --- |
| ⚡ Switch to | 141 | sunnyosun | 2022-11-09 |
| cloudpath for |
| caching |
| --- | --- | --- | --- | --- |
| ⚡ Cache species | 140 | sunnyosun | 2022-11-06 | 0.5.1 |
| table |
| --- | --- | --- | --- | --- |
| 📝 Link the species | 139 | sunnyosun | 2022-10-25 | 0.5.0 |
| df to bionty-assets |
| --- | --- | --- | --- | --- |
| 🍱 Updated protein | 138 | sunnyosun | 2022-10-25 |
| table |
| --- | --- | --- | --- | --- |
| 🍱 Updated cell | 137 | sunnyosun | 2022-10-25 |
| marker link |
| --- | --- | --- | --- | --- |
| 🍱 Updated the | 136 | sunnyosun | 2022-10-25 | 0.4.3 |
| species df path to |
| use s3 |
| --- | --- | --- | --- | --- |
| 🍱 Updated gene | 135 | sunnyosun | 2022-10-25 |
| table |
| --- | --- | --- | --- | --- |
| 🚚 Migrated the | 134 | sunnyosun | 2022-10-24 | 0.4.2 |
| tables to the new |
| ids |
| --- | --- | --- | --- | --- |
| 🔥 Removed | 133 | sunnyosun | 2022-10-20 | 0.4.1 |
| "feature_model" |
| lookups |
| --- | --- | --- | --- | --- |
| 💥 Redefine "lookup" | 132 | sunnyosun | 2022-10-12 | 0.4.0 |
| in "EntityTable" |
| --- | --- | --- | --- | --- |
| 🎨 Improve | 131 | sunnyosun | 2022-10-11 | 0.3.2 |
| "todict()", added to |
| "EntityTable" |
| --- | --- | --- | --- | --- |
| 🐛 Fix duplicated | 130 | sunnyosun | 2022-10-03 | 0.3.1 |
| cell marker names |
| --- | --- | --- | --- | --- |
| 🍱 Added | 128 | sunnyosun | 2022-09-27 | 0.3.0 |
| "description" and |
| "version" columns to |
| the gene table |
| --- | --- | --- | --- | --- |
| 🚚 Migrated dfs of | 127 | sunnyosun | 2022-09-26 | 0.2.5 |
| gene, protein, cell |
| marker to the lndb |
| version |
| --- | --- | --- | --- | --- |
| 🚚 Rename guides to | 125 | falexwolf | 2022-09-05 |
| FAQ, tutorials to |
| guide |
| --- | --- | --- | --- | --- |
| 🔥 Remove cell_type, | 123 | sunnyosun | 2022-08-29 | 0.2.4 |
| disease from lookup |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 122 | sunnyosun | 2022-08-28 | 0.2.3 |
| "cell_marker" column |
| to "name" to fit |
| schema |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 121 | sunnyosun | 2022-08-28 | 0.2.2 |
| gene_symbol to |
| symbol |
| --- | --- | --- | --- | --- |
| 🔥 Remove | 120 | sunnyosun | 2022-08-28 |
| "lookup.cell_marker" |
| --- | --- | --- | --- | --- |
| 🎨 Fixed bugs in | 119 | sunnyosun | 2022-08-28 | 0.2.1 |
| ontology class |
| --- | --- | --- | --- | --- |
| 🚚 Moved ".entity" | 118 | sunnyosun | 2022-08-27 |
| to the base class |
| --- | --- | --- | --- | --- |
| 📝 Updated docs etc | 117 | sunnyosun | 2022-08-27 |
| --- | --- | --- | --- | --- |
| ✅ Added more tests | 116 | sunnyosun | 2022-08-27 |
| --- | --- | --- | --- | --- |
| ✨ Added "Tissue" | 115 | sunnyosun | 2022-08-27 |
| entity |
| --- | --- | --- | --- | --- |
| ✨ Added | 114 | sunnyosun | 2022-08-26 | 0.2.0 |
| "CellMarker" entity |
| --- | --- | --- | --- | --- |
| 🚚 Updated protein | 113 | sunnyosun | 2022-08-26 |
| df, rename "name" to |
| "gene_symbol" |
| --- | --- | --- | --- | --- |
| 📝 Added lookup to | 112 | sunnyosun | 2022-08-25 |
| the API ref |
| --- | --- | --- | --- | --- |
| 🔊 Added "n_mapped" | 111 | sunnyosun | 2022-08-18 | 0.1.11 |
| to logging |
| --- | --- | --- | --- | --- |
| 🚚 Rename gene_ids | 110 | sunnyosun | 2022-08-18 | 0.1.10 |
| to gene_id |
| --- | --- | --- | --- | --- |
| 🎨 Migrate to | 109 | sunnyosun | 2022-08-18 |
| ensembl gene |
| reference |
| --- | --- | --- | --- | --- |
| 🎨 Ensure | 108 | sunnyosun | 2022-08-16 |
| "entrez_gene_id" is |
| "int" |
| --- | --- | --- | --- | --- |
| ⚡ Use display_name | 107 | sunnyosun | 2022-08-15 |
| as common_name so |
| that its unique |
| --- | --- | --- | --- | --- |
| 🩹 Increased timeout | 106 | sunnyosun | 2022-08-11 | 0.1.9 |
| --- | --- | --- | --- | --- |
| 🩹 Modify "get_term" | 104 | sunnyosun | 2022-08-10 | 0.1.8 |
| --- | --- | --- | --- | --- |
| ✨ Use pronto to | 103 | sunnyosun | 2022-08-08 | 0.1.7 |
| access cell type |
| ontology |
| --- | --- | --- | --- | --- |
| 🐛 Fixed duplicated | 100 | sunnyosun | 2022-07-31 | 0.1.6 |
| index during curate |
| --- | --- | --- | --- | --- |
| ✨ Added "lookup" | 98 | sunnyosun | 2022-07-31 | 0.1.5 |
| module for lookups |
| --- | --- | --- | --- | --- |
| 🔥 Removed | 97 | sunnyosun | 2022-07-28 | 0.1.4 |
| duplicated code in |
| lookup |
| --- | --- | --- | --- | --- |
| ✨ Added shortcuts | 96 | sunnyosun | 2022-07-28 | 0.1.3 |
| for looking up |
| static sets |
| --- | --- | --- | --- | --- |
| 🔥 Switched logger | 95 | sunnyosun | 2022-07-23 |
| to use lamin-logger |
| --- | --- | --- | --- | --- |
| ✨ Allow to input | 93 | sunnyosun | 2022-07-11 | 0.1.2 |
| columns with non- |
| standard names |
| --- | --- | --- | --- | --- |
| ✨ Maps alias when | 92 | sunnyosun | 2022-07-06 |
| using gene symbols |
| --- | --- | --- | --- | --- |
| 🎨  Added a | 89 | falexwolf | 2022-07-02 | 0.1.1 |
| developer API |
| --- | --- | --- | --- | --- |
| ✅ Add more tests | 88 | falexwolf | 2022-07-02 |
| for curation, rename |
| "Table" to |
| "EntityTable" |
| --- | --- | --- | --- | --- |
| ♻️ Refactor curation | 87 | falexwolf | 2022-07-02 |
| --- | --- | --- | --- | --- |
| 📝 Prototype index | 86 | falexwolf | 2022-07-02 |
| standardization |
| --- | --- | --- | --- | --- |
| 🎨 Polish APIs and | 85 | sunnyosun | 2022-06-30 |
| tutorials |
| --- | --- | --- | --- | --- |
| ✨ Added MGI for | 84 | sunnyosun | 2022-06-29 |
| mouse genes, |
| switched to use |
| feather for HGNC |
| --- | --- | --- | --- | --- |
| 🍱 Added back the | 83 | sunnyosun | 2022-06-29 |
| Protein entity |
| --- | --- | --- | --- | --- |
| 🚚 Move hard-to-test | 82 | falexwolf | 2022-06-28 |
| code from bionty |
| into asset curation |
| --- | --- | --- | --- | --- |
| 🏗️ Simplify Bionty | 81 | falexwolf | 2022-06-28 |
| --- | --- | --- | --- | --- |
| 🚸 Pull disease data | 80 | falexwolf | 2022-06-27 |
| from bionty-assets |
| --- | --- | --- | --- | --- |
| 🚸 Replace HGNC file | 79 | falexwolf | 2022-06-26 |
| access with our S3 |
| bucket |
| --- | --- | --- | --- | --- |
| ✅ Added disease and | 78 | sunnyosun | 2022-06-26 |
| tissue to quickstart |
| --- | --- | --- | --- | --- |
| 👷 Update coverage | 77 | sunnyosun | 2022-06-26 |
| setup |
| --- | --- | --- | --- | --- |
| ✅ Collect coverage | 76 | sunnyosun | 2022-06-26 |
| from test nbs |
| --- | --- | --- | --- | --- |
| 💄 Added badges for | 75 | sunnyosun | 2022-06-25 |
| build, codecov, |
| pypi, pre-commit |
| --- | --- | --- | --- | --- |
| 👷 Added Codecov to | 73 | sunnyosun | 2022-06-25 |
| the build.yml |
| --- | --- | --- | --- | --- |
| 📝 Iterate | 71 | falexwolf | 2022-06-24 |
| quickstart for |
| better readability |
| --- | --- | --- | --- | --- |
| 💥 Improved | 67 | sunnyosun | 2022-06-22 | 0.1.0 |
| quickstart, |
| implemented |
| .dataclass |
| everywhere |
| --- | --- | --- | --- | --- |
| 🔥 Remove versioneer | 66 | falexwolf | 2022-06-22 |
| --- | --- | --- | --- | --- |
| ⚡ Implemented | 65 | sunnyosun | 2022-06-22 | 0.1a3 |
| pickling of |
| dataclasses, |
| refactored static |
| class into |
| ".dataclass" |
| --- | --- | --- | --- | --- |
| 🚚 Renamed Celltype | 62 | sunnyosun | 2022-06-17 | 0.1a2 |
| to CellType, fixed |
| gene Entry fields |
| --- | --- | --- | --- | --- |
| 📝 Rewrite landing | 61 | falexwolf | 2022-06-17 |
| page and rename |
| tasks |
| --- | --- | --- | --- | --- |
| ✨ Added static | 59 | sunnyosun | 2022-06-16 |
| class "gene" |
| --- | --- | --- | --- | --- |
| 💄 Prettified | 58 | sunnyosun | 2022-06-15 |
| ontology docstring |
| --- | --- | --- | --- | --- |
| 🔨 "Species" class | 56 | sunnyosun | 2022-06-13 |
| by default taks a |
| "common_name" |
| --- | --- | --- | --- | --- |
| ♻️ Refactored | 55 | sunnyosun | 2022-06-13 | 0.1a1 |
| "species" |
| --- | --- | --- | --- | --- |
| ♻️ Refactored | 54 | sunnyosun | 2022-06-13 |
| "species" |
| --- | --- | --- | --- | --- |
| ⚡ Speed up requests | 53 | sunnyosun | 2022-06-12 |
| with "async" |
| --- | --- | --- | --- | --- |
| 💚 Fix docs build | 52 | falexwolf | 2022-06-10 |
| warnings/errors |
| --- | --- | --- | --- | --- |
| ♻️ Refactored | 51 | sunnyosun | 2022-06-10 |
| "species" for dual |
| usage |
| --- | --- | --- | --- | --- |
| 🚚 Rename "taxon" to | 50 | sunnyosun | 2022-06-10 |
| "species" |
| --- | --- | --- | --- | --- |
| 🎨 Made "Ensembl" | 45 | sunnyosun | 2022-06-09 |
| its own class |
| --- | --- | --- | --- | --- |
| ✨ Propose new | 44 | sunnyosun | 2022-06-07 |
| design of the entity |
| APIs |
| --- | --- | --- | --- | --- |
| 🐛 Fix "gene.id" | 43 | sunnyosun | 2022-06-03 |
| fields |
| --- | --- | --- | --- | --- |
| 🐛 Fix "standardize" | 41 | sunnyosun | 2022-06-03 |
| to work on any |
| iterables |
| --- | --- | --- | --- | --- |
| 🎨 Implement an | 40 | sunnyosun | 2022-06-02 |
| initial |
| ".standardize()" in |
| the "Ontology" |
| manager |
| --- | --- | --- | --- | --- |
| ✨ Introduce | 38 | sunnyosun | 2022-06-01 |
| "tissue" |
| --- | --- | --- | --- | --- |
| ✨ Introduce | 36 | sunnyosun | 2022-06-01 |
| "disease" |
| --- | --- | --- | --- | --- |
| ✨ Introduce | 34 | sunnyosun | 2022-05-30 |
| "celltype" |
| --- | --- | --- | --- | --- |

# "lamindb"

A data framework for biology.

GitHub: github.com/laminlabs/lamindb

| --- | --- | --- | --- | --- |
| Name | PR | Developer | Date | Version |
| ====================== | ====================== | ====================== | ====================== | ====================== |
| 🐛 Fix bugs in "lndb | 415 | falexwolf | 2022-12-22 | 0.22.2 |
| set" & "lndb info" |
| --- | --- | --- | --- | --- |
| ✅ Error behavior | 414 | falexwolf | 2022-12-20 |
| for ingest |
| --- | --- | --- | --- | --- |
| 🎨 Simplify | 413 | sunnyosun | 2022-12-16 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 412 | falexwolf | 2022-12-16 | 0.22.1 |
| setup |
| --- | --- | --- | --- | --- |
| 🚸 Better CLI & | 411 | falexwolf | 2022-12-15 | 0.22.0 |
| logging |
| --- | --- | --- | --- | --- |
| ⬆️ Updated setup | 409 | sunnyosun | 2022-12-15 | 0.21.5 |
| --- | --- | --- | --- | --- |
| 🚸 Make "nb.run" and | 408 | falexwolf | 2022-12-14 |
| "nb.notebook" public |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade wetlab | 407 | bpenteado | 2022-12-13 | 0.21.4 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 405 | falexwolf | 2022-12-13 | 0.21.3 |
| setup |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 404 | sunnyosun | 2022-12-13 | 0.21.2 |
| setup |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 403 | falexwolf | 2022-12-12 | 0.21.1 |
| setup |
| --- | --- | --- | --- | --- |
| 📝 Fix docs | 402 | falexwolf | 2022-12-09 |
| --- | --- | --- | --- | --- |
| 🎨 Integrate | 400 | sunnyosun | 2022-12-09 | 0.21.0 |
| "ln.record" into |
| "lns.DObject" → |
| "ln.DObject" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade setup, | 398 | falexwolf | 2022-12-08 | 0.20.0 |
| core & wetlab schema |
| --- | --- | --- | --- | --- |
| 🔥 Drop all logic | 397 | fredericenard | 2022-12-08 |
| related to dynamic |
| settings |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade wetlab | 395 | bpenteado | 2022-12-06 | 0.19.4 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade wetlab | 394 | bpenteado | 2022-12-06 | 0.19.3 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade wetlab | 393 | sunnyosun | 2022-12-06 | 0.19.2 |
| --- | --- | --- | --- | --- |
| 🐛 Fix view | 392 | falexwolf | 2022-12-05 | 0.19.1 |
| --- | --- | --- | --- | --- |
| 🎨 Enable inheriting | 391 | falexwolf | 2022-12-05 | 0.19.0 |
| wetlab schemas |
| --- | --- | --- | --- | --- |
| ✅ Better tests for | 390 | falexwolf | 2022-12-04 |
| features hashing |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 389 | fredericenard | 2022-12-04 | 0.18.9 |
| setup |
| --- | --- | --- | --- | --- |
| ✨ Check duplication | 387 | sunnyosun | 2022-11-30 | 0.18.8 |
| before inserting |
| records |
| --- | --- | --- | --- | --- |
| 🚸 Do not autoflush | 386 | falexwolf | 2022-11-30 | 0.18.7 |
| upon select |
| --- | --- | --- | --- | --- |
| 🐛 Fix bug in schema | 384 | falexwolf | 2022-11-29 |
| module name lookup |
| --- | --- | --- | --- | --- |
| ⬆️ Updated wetlab | 383 | sunnyosun | 2022-11-29 | 0.18.6 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 382 | falexwolf | 2022-11-28 | 0.18.5 |
| "lnschema-core" and |
| "lndb-setup" |
| --- | --- | --- | --- | --- |
| ✨ Improve lazy | 375 | Koncopd | 2022-11-28 |
| selectors |
| --- | --- | --- | --- | --- |
| ⬆️ Update wetlab | 381 | sunnyosun | 2022-11-28 | 0.18.4 |
| schema |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade wetlab | 380 | sunnyosun | 2022-11-28 | 0.18.3 |
| schema |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade "lndb- | 379 | fredericenard | 2022-11-28 | 0.18.2 |
| setup" & "lnschema- |
| core" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 378 | falexwolf | 2022-11-25 |
| setup to 0.18.1 |
| --- | --- | --- | --- | --- |
| 🔥 Removed | 373 | sunnyosun | 2022-11-24 | 0.18.1 |
| bioreadout |
| --- | --- | --- | --- | --- |
| ✨ Add lazy | 370 | Koncopd | 2022-11-23 |
| selectors to |
| "ln.subset" |
| --- | --- | --- | --- | --- |
| 🏗️ Persist the | 372 | falexwolf | 2022-11-23 |
| session |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb- | 371 | fredericenard | 2022-11-23 |
| setup |
| --- | --- | --- | --- | --- |
| ✨ Add subset | 368 | Koncopd | 2022-11-23 | 0.18.0 |
| function for |
| dobjects |
| --- | --- | --- | --- | --- |
| 🎨 Drop "Biometa" | 369 | falexwolf | 2022-11-22 |
| --- | --- | --- | --- | --- |
| 🎨 Simplify schema | 367 | falexwolf | 2022-11-22 |
| module handling |
| --- | --- | --- | --- | --- |
| 📝 Bring back guide | 365 | falexwolf | 2022-11-21 | 0.17.0 |
| to linking sample- |
| level metadata |
| --- | --- | --- | --- | --- |
| 📝 Add flow example | 363 | falexwolf | 2022-11-21 |
| back to main guide |
| --- | --- | --- | --- | --- |
| 📝 Update schema | 362 | falexwolf | 2022-11-21 |
| --- | --- | --- | --- | --- |
| 🩹 Restore default | 361 | Koncopd | 2022-11-20 |
| "fsspec" for upload |
| --- | --- | --- | --- | --- |
| 🎨 Prettify API | 359 | falexwolf | 2022-11-18 |
| --- | --- | --- | --- | --- |
| 🐛 Also return | 358 | falexwolf | 2022-11-18 |
| existing features |
| --- | --- | --- | --- | --- |
| 📝 Fix select gene | 357 | falexwolf | 2022-11-18 |
| doc |
| --- | --- | --- | --- | --- |
| 🏗️ Refactor ingest | 356 | falexwolf | 2022-11-17 |
| --- | --- | --- | --- | --- |
| ✨ Knowledge guide | 353 | sunnyosun | 2022-11-16 |
| --- | --- | --- | --- | --- |
| 🎨 Separate | 355 | falexwolf | 2022-11-16 | 0.16.0 |
| "nb.publish" from |
| "ingest.commit" |
| --- | --- | --- | --- | --- |
| 🐛 Fix data source | 354 | falexwolf | 2022-11-15 |
| --- | --- | --- | --- | --- |
| 🚚 Move storage key | 352 | falexwolf | 2022-11-14 | 0.15.0 |
| to core schema |
| --- | --- | --- | --- | --- |
| 🐛 Fixed | 351 | sunnyosun | 2022-11-14 |
| "species_id" in bio |
| entity tables |
| --- | --- | --- | --- | --- |
| ✨ Initialize | 350 | falexwolf | 2022-11-12 | 0.14.0 |
| "Jupynb" "run" upon |
| "nb.header()" |
| --- | --- | --- | --- | --- |
| 🏗️ Aggregate "Run" | 349 | falexwolf | 2022-11-12 |
| and "DTransform" |
| --- | --- | --- | --- | --- |
| ⬆️ Updated bionty | 348 | sunnyosun | 2022-11-11 |
| --- | --- | --- | --- | --- |
| 📝 Make notebook for | 347 | falexwolf | 2022-11-11 | 0.13.0 |
| "link_features" |
| --- | --- | --- | --- | --- |
| ✨ Join dataframes | 345 | falexwolf | 2022-11-10 |
| --- | --- | --- | --- | --- |
| ✨ Fields in join | 344 | falexwolf | 2022-11-10 |
| --- | --- | --- | --- | --- |
| ✅ Add tests for | 342 | Koncopd | 2022-11-10 |
| zarr ingest and load |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 343 | falexwolf | 2022-11-10 |
| "PipelineRun" to |
| "Run" |
| --- | --- | --- | --- | --- |
| 🐛 Fix "view" | 341 | falexwolf | 2022-11-09 | 0.12.1 |
| --- | --- | --- | --- | --- |
| 🚚 Rename view arg | 340 | falexwolf | 2022-11-09 | 0.12.0 |
| --- | --- | --- | --- | --- |
| 📝 Refactor select | 339 | falexwolf | 2022-11-08 |
| notebooks |
| --- | --- | --- | --- | --- |
| 📝 Simplify arg in | 338 | falexwolf | 2022-11-08 |
| link |
| --- | --- | --- | --- | --- |
| ♻️ Refactor select | 337 | falexwolf | 2022-11-08 |
| --- | --- | --- | --- | --- |
| ⬆️ Update to | 334 | sunnyosun | 2022-11-06 |
| "bionty==0.5.3" |
| --- | --- | --- | --- | --- |
| 🚚 Rename entries to | 333 | sunnyosun | 2022-11-04 |
| records in link |
| --- | --- | --- | --- | --- |
| 📝 Improve guide | 332 | falexwolf | 2022-11-04 |
| --- | --- | --- | --- | --- |
| 🎨 Migrate to the | 331 | falexwolf | 2022-11-04 | 0.11.0 |
| new schema modules |
| --- | --- | --- | --- | --- |
| 🔥 Removed | 330 | sunnyosun | 2022-11-03 |
| "link_biometa" |
| --- | --- | --- | --- | --- |
| 🎨 Removed "get", | 329 | sunnyosun | 2022-11-03 |
| re-organized API |
| docs |
| --- | --- | --- | --- | --- |
| 🚚 Move ".db" API to | 328 | sunnyosun | 2022-11-03 |
| root level |
| --- | --- | --- | --- | --- |
| 🚚 Remove A prefix | 327 | falexwolf | 2022-11-03 |
| from notebooks |
| --- | --- | --- | --- | --- |
| ✨ Storage related | 322 | Koncopd | 2022-11-03 |
| features |
| --- | --- | --- | --- | --- |
| 🎨 Simplify | 326 | sunnyosun | 2022-11-02 |
| generating records |
| --- | --- | --- | --- | --- |
| 🐛 Fixed bug in | 325 | sunnyosun | 2022-11-01 |
| linking features |
| --- | --- | --- | --- | --- |
| 🍱 Added "anndata_m | 324 | sunnyosun | 2022-11-01 |
| ouse_sc_lymph_node" |
| --- | --- | --- | --- | --- |
| 🚚 Rename "schema._ | 323 | sunnyosun | 2022-11-01 |
| table.Table" to |
| "table_meta" |
| --- | --- | --- | --- | --- |
| 🎨 Added LinkFeatur | 320 | sunnyosun | 2022-10-31 |
| eToKnowledgeTable |
| --- | --- | --- | --- | --- |
| ⬆️ Update lndb setup | 321 | fredericenard | 2022-10-27 | 0.10.0 |
| --- | --- | --- | --- | --- |
| ⬆️ Pinned bionty | 319 | sunnyosun | 2022-10-26 |
| version |
| --- | --- | --- | --- | --- |
| ⬆️ Updated to | 317 | sunnyosun | 2022-10-24 |
| lnschema_bionty |
| 0.4.4 |
| --- | --- | --- | --- | --- |
| 🔥 Remove lndb-hub | 318 | fredericenard | 2022-10-24 |
| import |
| --- | --- | --- | --- | --- |
| ✨ Enable to get | 310 | fredericenard | 2022-10-24 |
| metadata from "Inst |
| anceSettingsStore" |
| --- | --- | --- | --- | --- |
| 📝 Rename row to | 316 | falexwolf | 2022-10-23 |
| record when not yet |
| added to the DB |
| --- | --- | --- | --- | --- |
| ⬆️ Update lndb hub | 315 | fredericenard | 2022-10-23 |
| version |
| --- | --- | --- | --- | --- |
| 🎨 Replace "insert" | 308 | falexwolf | 2022-10-22 |
| and "update" with |
| "add" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade "lnbfx" | 311 | bpenteado | 2022-10-22 |
| to 0.4.5 |
| --- | --- | --- | --- | --- |
| 📝 Update postgres | 314 | bpenteado | 2022-10-22 |
| faq notebook |
| --- | --- | --- | --- | --- |
| 🚚 Moved the rds | 309 | sunnyosun | 2022-10-21 |
| notebooks to "rnd- |
| demo" repo |
| --- | --- | --- | --- | --- |
| ✨ Added "ln.link" | 307 | sunnyosun | 2022-10-21 |
| to populate link |
| tables given two |
| table entries |
| --- | --- | --- | --- | --- |
| 🔥 Remove hub import | 301 | fredericenard | 2022-10-21 |
| --- | --- | --- | --- | --- |
| 🎨 Overhaul "select" | 300 | falexwolf | 2022-10-21 |
| and add "get" |
| --- | --- | --- | --- | --- |
| 🩹 Skip | 302 | sunnyosun | 2022-10-21 |
| nc_evolutions table |
| created by nocodb |
| --- | --- | --- | --- | --- |
| ✨ Added "knowledge" | 299 | sunnyosun | 2022-10-20 |
| module |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade wetlab | 297 | sunnyosun | 2022-10-20 | 0.9.6 |
| schema |
| --- | --- | --- | --- | --- |
| ⬆️ Added "dset" and | 296 | sunnyosun | 2022-10-19 | 0.9.5 |
| "project" tables to |
| core |
| --- | --- | --- | --- | --- |
| 🩹 Fixed rds nbs | 295 | sunnyosun | 2022-10-18 |
| --- | --- | --- | --- | --- |
| 📝 Add prisma | 294 | fredericenard | 2022-10-18 |
| examples and |
| implementation ideas |
| --- | --- | --- | --- | --- |
| ♻️ Refactor linked | 286 | sunnyosun | 2022-10-18 | 0.9.4 |
| select |
| --- | --- | --- | --- | --- |
| ✏️ Fix typo in link | 292 | bpenteado | 2022-10-17 |
| table entry fetching |
| --- | --- | --- | --- | --- |
| 🐛 Fixed link via | 291 | sunnyosun | 2022-10-15 | 0.9.3 |
| link tables |
| --- | --- | --- | --- | --- |
| ✨ Add an option to | 288 | Koncopd | 2022-10-15 |
| use "fsspec" for |
| upload |
| --- | --- | --- | --- | --- |
| ✨ Load returns | 287 | sunnyosun | 2022-10-13 | 0.9.2 |
| filepath if no in- |
| memory format is |
| found |
| --- | --- | --- | --- | --- |
| 🎨 Clean up | commit | falexwolf | 2022-10-13 | 0.9.1 |
| dtransform_in |
| --- | --- | --- | --- | --- |
| 🎨 Continue overhaul | 285 | falexwolf | 2022-10-13 | 0.9.0 |
| --- | --- | --- | --- | --- |
| 🎨 Refactor linking | 283 | falexwolf | 2022-10-13 |
| dobjects & base64 |
| encode checksum |
| --- | --- | --- | --- | --- |
| 🐛 View only prints | 284 | sunnyosun | 2022-10-12 |
| existing tables |
| --- | --- | --- | --- | --- |
| ✨ Added "db.view", | 282 | sunnyosun | 2022-10-12 | 0.8.3 |
| rename "schema.draw" |
| to "schema.view" |
| --- | --- | --- | --- | --- |
| ⬆️ Added bioreadout | 281 | sunnyosun | 2022-10-12 |
| lookup to guide |
| --- | --- | --- | --- | --- |
| 🚚 Rename query to | 280 | falexwolf | 2022-10-12 |
| select |
| --- | --- | --- | --- | --- |
| 🩹 Fix out of sync | 279 | Koncopd | 2022-10-12 |
| db warning |
| --- | --- | --- | --- | --- |
| ✨ Add streaming | 277 | Koncopd | 2022-10-12 |
| zarr write and |
| streaming h5ad and |
| zarr read |
| --- | --- | --- | --- | --- |
| 💄 Cosmetics | 276 | falexwolf | 2022-10-12 |
| --- | --- | --- | --- | --- |
| ♻️ Refactor ingest & | 273 | falexwolf | 2022-10-11 |
| insert |
| --- | --- | --- | --- | --- |
| ✨ Compute checksum | 274 | fredericenard | 2022-10-11 |
| during ingest |
| --- | --- | --- | --- | --- |
| 🚚 Moved bfx | 272 | sunnyosun | 2022-10-11 |
| ingestion to faq |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 271 | falexwolf | 2022-10-10 | 0.8.2 |
| "lndb_setup" 0.12.0 |
| --- | --- | --- | --- | --- |
| 📝 Improved ingest | 270 | sunnyosun | 2022-10-10 |
| guides, fixed linked |
| entry bugs |
| --- | --- | --- | --- | --- |
| 🐛 Fixed | 269 | sunnyosun | 2022-10-10 | 0.8.1 |
| dobject_biometa |
| entry insertion |
| --- | --- | --- | --- | --- |
| 📝 Update test users | 268 | falexwolf | 2022-10-10 |
| in docs |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 267 | falexwolf | 2022-10-10 | 0.8.0 |
| "lndb_setup" to |
| 0.11.0 and |
| "nbproject" to 0.7.0 |
| --- | --- | --- | --- | --- |
| 🎨 | 266 | sunnyosun | 2022-10-10 |
| "insert.from_list" |
| accepts entries |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 265 | Koncopd | 2022-10-10 |
| "nbproject" version |
| to 0.5.5 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 264 | fredericenard | 2022-10-10 |
| "lndb_setup" version |
| to 0.10.1 |
| --- | --- | --- | --- | --- |
| 📝 Improved docs of | 262 | sunnyosun | 2022-10-10 | 0.7.2 |
| "ingest", |
| reorganized file |
| structure |
| --- | --- | --- | --- | --- |
| 💥 Refactor | 257 | sunnyosun | 2022-10-08 | 0.7.1 |
| "ingest", new |
| pipeline ingestion |
| logic, postgres test |
| --- | --- | --- | --- | --- |
| 📝 Overhauled get- | 259 | falexwolf | 2022-10-07 |
| started |
| --- | --- | --- | --- | --- |
| 🚸 Check for | 258 | falexwolf | 2022-10-07 |
| existence before |
| deletion |
| --- | --- | --- | --- | --- |
| 🎨 Make ingest a | 256 | sunnyosun | 2022-10-07 | 0.7.0 |
| static class |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to core | 255 | falexwolf | 2022-10-07 |
| schema 0.10.0 |
| --- | --- | --- | --- | --- |
| ✨ New ingest API | 254 | sunnyosun | 2022-10-05 | 0.6.0 |
| --- | --- | --- | --- | --- |
| 📝 Overhaul | 253 | falexwolf | 2022-10-05 |
| documentation |
| --- | --- | --- | --- | --- |
| 🔧 Update lndb setup | 252 | fredericenard | 2022-10-04 |
| to 0.9.4 |
| --- | --- | --- | --- | --- |
| 🔧 Enable setup | 250 | fredericenard | 2022-10-04 |
| outside cli |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 249 | falexwolf | 2022-10-03 | 0.5.0 0.5.0 |
| lndb_setup and |
| bionty |
| --- | --- | --- | --- | --- |
| 🚸 Check for | 247 | falexwolf | 2022-10-03 |
| migrations upon |
| import |
| --- | --- | --- | --- | --- |
| 🔊 Raise warnings | 248 | sunnyosun | 2022-10-03 |
| for unpopulated |
| columns from |
| insert.from_df |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 246 | fredericenard | 2022-10-03 |
| "lndb_setup" to |
| 0.8.3 |
| --- | --- | --- | --- | --- |
| ♻️ Inherit | 243 | bpenteado | 2022-10-01 | 0.4.1 |
| "IngestObject" and |
| "IngestPipelineRun" |
| from "IngestEntity" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 241 | falexwolf | 2022-09-30 |
| lnschema_core 0.9.0 |
| --- | --- | --- | --- | --- |
| 🎨 Add type | 240 | sunnyosun | 2022-09-30 |
| annotation to ingest |
| --- | --- | --- | --- | --- |
| ♻️ Generalize | 237 | bpenteado | 2022-09-30 |
| pipeline ingestion |
| --- | --- | --- | --- | --- |
| ✨ Added | 238 | sunnyosun | 2022-09-29 |
| "one_or_none", fixed |
| api links |
| --- | --- | --- | --- | --- |
| 🎨 Get db metadata | 233 | fredericenard | 2022-09-29 |
| as a dictionary |
| --- | --- | --- | --- | --- |
| 🎨 Added ".df()" as | 236 | sunnyosun | 2022-09-29 |
| an option to return |
| select results |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade pkg | 234 | sunnyosun | 2022-09-29 |
| versions |
| --- | --- | --- | --- | --- |
| 🚸 Test notebook | 232 | falexwolf | 2022-09-26 |
| integrity before |
| anything else |
| --- | --- | --- | --- | --- |
| 📝 Add a quickstart | 231 | falexwolf | 2022-09-26 |
| & update ingest |
| --- | --- | --- | --- | --- |
| 📝 Update bfx | 227 | bpenteado | 2022-09-26 |
| ingestion demo |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 230 | sunnyosun | 2022-09-26 |
| insert.features to |
| insert.featureset_f |
| rom_features |
| --- | --- | --- | --- | --- |
| 📝 Polish | 229 | falexwolf | 2022-09-26 |
| documentation |
| --- | --- | --- | --- | --- |
| ✨ Populate | 228 | falexwolf | 2022-09-26 |
| "dobject" size |
| --- | --- | --- | --- | --- |
| 🚸 Sort select | 226 | falexwolf | 2022-09-25 |
| results in DataFrame |
| by source |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to core | 223 | falexwolf | 2022-09-25 |
| schema 0.7.3 |
| --- | --- | --- | --- | --- |
| 🩹 Removed logging | 221 | sunnyosun | 2022-09-24 |
| for inserting link |
| tables |
| --- | --- | --- | --- | --- |
| ✨ Ingest bfx | 215 | bpenteado | 2022-09-24 |
| outputs with sample |
| metadata |
| --- | --- | --- | --- | --- |
| 👷 Improve notebook | 218 | falexwolf | 2022-09-23 |
| test function |
| --- | --- | --- | --- | --- |
| 🧱 Improved code | 216 | sunnyosun | 2022-09-23 | 0.4.0 |
| infra |
| --- | --- | --- | --- | --- |
| ✨ Account for | 214 | falexwolf | 2022-09-23 |
| multiple "filepath" |
| suffixes |
| --- | --- | --- | --- | --- |
| ♻️ Refactored | 213 | sunnyosun | 2022-09-23 |
| feature model |
| ingestion |
| --- | --- | --- | --- | --- |
| ♻️ Refactored insert | 211 | sunnyosun | 2022-09-22 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 212 | falexwolf | 2022-09-22 |
| "lndb_setup" and |
| "lnschema_bionty" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to core | 208 | falexwolf | 2022-09-21 |
| schema 0.7.2 |
| --- | --- | --- | --- | --- |
| 🚑 "dtransform" is | 207 | sunnyosun | 2022-09-21 | 0.3.11 |
| either |
| "pipeline_run" or |
| "jupynb" |
| --- | --- | --- | --- | --- |
| 🐛 Fixed column | 206 | sunnyosun | 2022-09-19 | 0.3.10 |
| mapping |
| --- | --- | --- | --- | --- |
| ✨ Allow batch | 205 | sunnyosun | 2022-09-19 |
| insertion |
| --- | --- | --- | --- | --- |
| ♻️ Refactored linked | 204 | sunnyosun | 2022-09-15 |
| queries |
| --- | --- | --- | --- | --- |
| ⬆️ Update lnbfx to | 199 | bpenteado | 2022-09-14 | 0.3.9 |
| 0.3.5 |
| --- | --- | --- | --- | --- |
| 🔊 Refactor pipeline | 197 | bpenteado | 2022-09-14 | 0.3.8 |
| logging |
| --- | --- | --- | --- | --- |
| ✨ Insert unmapped | 198 | sunnyosun | 2022-09-14 |
| features |
| --- | --- | --- | --- | --- |
| ♻️ Refactored linked | 196 | sunnyosun | 2022-09-13 |
| queries |
| --- | --- | --- | --- | --- |
| ⬆️ Updated wetlab | 195 | sunnyosun | 2022-09-13 |
| schema |
| --- | --- | --- | --- | --- |
| ♻️ Refactor pipeline | 193 | bpenteado | 2022-09-13 | 0.3.7 |
| logging |
| --- | --- | --- | --- | --- |
| ⬆️ Updated lnbfx | 194 | sunnyosun | 2022-09-12 | 0.3.6 |
| version |
| --- | --- | --- | --- | --- |
| 🍱 Updated cell | 192 | sunnyosun | 2022-09-12 |
| ranger test dir |
| --- | --- | --- | --- | --- |
| 🐛 Fix | 191 | Koncopd | 2022-09-12 |
| synchronization |
| error in load |
| --- | --- | --- | --- | --- |
| ⬆️ Updated setup | 189 | sunnyosun | 2022-09-08 | 0.3.5 |
| version |
| --- | --- | --- | --- | --- |
| ♻️ Split ingestion | 188 | bpenteado | 2022-09-06 |
| logic into |
| IngestObject and |
| IngestPipeline |
| --- | --- | --- | --- | --- |
| 📝 Add flow data | 186 | sunnyosun | 2022-09-06 |
| ingestion example |
| --- | --- | --- | --- | --- |
| 💄 Added sidebar to | 185 | sunnyosun | 2022-09-06 |
| guide |
| --- | --- | --- | --- | --- |
| ♻️ Split pipeline | 183 | bpenteado | 2022-09-06 |
| ingestion from non- |
| pipeline ingestion |
| --- | --- | --- | --- | --- |
| ⬆️ Updated schema | 184 | sunnyosun | 2022-09-06 |
| module versions |
| --- | --- | --- | --- | --- |
| ♻️ Refactored | 182 | sunnyosun | 2022-09-05 |
| "select" |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 181 | sunnyosun | 2022-09-05 |
| "return_df" to |
| "as_df" in "select" |
| --- | --- | --- | --- | --- |
| 🚚 Rename "guides" | 180 | falexwolf | 2022-09-05 |
| to "faq" & |
| "tutorials" to |
| "guide" |
| --- | --- | --- | --- | --- |
| ♻️ Refactored guide | 179 | sunnyosun | 2022-09-03 |
| --- | --- | --- | --- | --- |
| 📝 Prettify | 178 | falexwolf | 2022-09-02 |
| documentation |
| --- | --- | --- | --- | --- |
| Update lndb_hub | 176 | fredericenard | 2022-09-01 |
| version |
| --- | --- | --- | --- | --- |
| ✨ Allow selecting | 175 | sunnyosun | 2022-09-01 | 0.3.4 |
| dobjects by |
| biological entities |
| --- | --- | --- | --- | --- |
| ⬆️ Update to sqm | 174 | sunnyosun | 2022-08-30 |
| 0.0.8 to silence the |
| warnings |
| --- | --- | --- | --- | --- |
| 🤡 R&D team | 172 | sunnyosun | 2022-08-30 |
| simulation |
| --- | --- | --- | --- | --- |
| 🚸 Fix pipeline | 158 | bpenteado | 2022-08-30 |
| ingestion logging |
| --- | --- | --- | --- | --- |
| 🚚 Move problems | 171 | falexwolf | 2022-08-30 |
| page to lamin- |
| profile |
| --- | --- | --- | --- | --- |
| 🩹 Uncomment out | 168 | fredericenard | 2022-08-30 |
| sharing tests |
| --- | --- | --- | --- | --- |
| 🔥 Removed examples | 170 | sunnyosun | 2022-08-30 |
| dir |
| --- | --- | --- | --- | --- |
| 🚸 Improve delete | 169 | falexwolf | 2022-08-30 |
| function |
| --- | --- | --- | --- | --- |
| 🎨 Remove "track" | 167 | falexwolf | 2022-08-29 |
| submodule, move |
| session, rename |
| biogram to erdiagram |
| --- | --- | --- | --- | --- |
| 🚚 Rename ".do" to | 166 | falexwolf | 2022-08-29 |
| ".db" |
| --- | --- | --- | --- | --- |
| 🎨 Move header call | 165 | falexwolf | 2022-08-29 |
| to "nb", re-export |
| all of nbproject |
| --- | --- | --- | --- | --- |
| 👷 Get rid of sqm | 164 | falexwolf | 2022-08-29 |
| warnings |
| --- | --- | --- | --- | --- |
| 🎨 Simplify loading | 163 | falexwolf | 2022-08-29 |
| data |
| --- | --- | --- | --- | --- |
| 👷 Allow stripping | 162 | falexwolf | 2022-08-29 | 0.3.3 |
| notebooks, upgrade |
| "nbproject_test" |
| --- | --- | --- | --- | --- |
| ✨ Use "cell_marker" | 161 | sunnyosun | 2022-08-28 |
| feature model for |
| flow data |
| --- | --- | --- | --- | --- |
| ⬆️ Updated to bionty | 160 | sunnyosun | 2022-08-28 |
| 0.2.2 |
| --- | --- | --- | --- | --- |
| ⬆️ Updated to sqm | 159 | sunnyosun | 2022-08-28 |
| 0.0.7 |
| --- | --- | --- | --- | --- |
| ⬆️ Updated | 157 | sunnyosun | 2022-08-28 |
| dependencies |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 156 | falexwolf | 2022-08-26 |
| "lnschema_core" |
| 0.5.1 |
| --- | --- | --- | --- | --- |
| ♻️ Update pipeline | 154 | bpenteado | 2022-08-26 |
| ingestion to |
| "lnschema_core" |
| 0.5.0 |
| --- | --- | --- | --- | --- |
| 🍱 Add scrnaseq | 151 | bpenteado | 2022-08-26 |
| cellranger dataset |
| --- | --- | --- | --- | --- |
| 🐛 Fix population of | 155 | falexwolf | 2022-08-26 |
| "dtransform" |
| --- | --- | --- | --- | --- |
| ✨ Populate | 153 | falexwolf | 2022-08-26 |
| "dtransform_in" |
| --- | --- | --- | --- | --- |
| ⬆️ Updated | 152 | sunnyosun | 2022-08-26 | 0.3.2 |
| dependencies |
| --- | --- | --- | --- | --- |
| ♻️ Refactor "lnbfx" | 149 | bpenteado | 2022-08-26 |
| integration |
| --- | --- | --- | --- | --- |
| 🚧 Temporary | 150 | sunnyosun | 2022-08-25 | 0.3.1 |
| solution to extend |
| modules |
| --- | --- | --- | --- | --- |
| 🏗️ Make tables | 148 | falexwolf | 2022-08-25 | 0.3.0 |
| within schema |
| modules configurable |
| --- | --- | --- | --- | --- |
| ✏️ Fixed typo in | 147 | sunnyosun | 2022-08-24 |
| check versions |
| --- | --- | --- | --- | --- |
| 🏗️ Use id to | 146 | fredericenard | 2022-08-23 |
| reference storage |
| --- | --- | --- | --- | --- |
| 🚚 Renamed | 145 | sunnyosun | 2022-08-23 |
| "FeatureModel" to |
| "LinkFeatureModel" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to lnbfx | 144 | falexwolf | 2022-08-23 |
| 0.2.0 |
| --- | --- | --- | --- | --- |
| 🚚 Renamed "id" to | 143 | sunnyosun | 2022-08-23 |
| "key" in "update" |
| and "delete" APIs |
| --- | --- | --- | --- | --- |
| ♻️ Cleaned up and | 142 | sunnyosun | 2022-08-23 |
| added a mouse |
| dataset |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade lndb-hub | 140 | fredericenard | 2022-08-23 |
| to v0.5.0 |
| --- | --- | --- | --- | --- |
| 💄 Added logging to | 141 | sunnyosun | 2022-08-22 |
| update and delete |
| --- | --- | --- | --- | --- |
| ✨ Autogenerate | 139 | sunnyosun | 2022-08-22 |
| "select", "update" |
| and "delete" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade core | 138 | falexwolf | 2022-08-22 |
| schema to v0.4.0 |
| --- | --- | --- | --- | --- |
| ✨ Track storage | 137 | fredericenard | 2022-08-22 |
| root location |
| --- | --- | --- | --- | --- |
| 🚚 Rename schema | 136 | falexwolf | 2022-08-19 |
| modules and |
| bioinformatics |
| module |
| --- | --- | --- | --- | --- |
| ✨ Integrate | 133 | bpenteado | 2022-08-18 |
| bioinformatics |
| pipline runs |
| --- | --- | --- | --- | --- |
| 📝 Updated docs | 135 | sunnyosun | 2022-08-18 |
| --- | --- | --- | --- | --- |
| 👽 Adapt to | 134 | sunnyosun | 2022-08-18 |
| "lnschema-bionty |
| 0.1.4" |
| --- | --- | --- | --- | --- |
| ⚡ Ingest genes | 131 | sunnyosun | 2022-08-16 |
| properly |
| --- | --- | --- | --- | --- |
| ✨ New readout | 130 | sunnyosun | 2022-08-12 |
| table, registered |
| species |
| --- | --- | --- | --- | --- |
| 🚚 Migrate | 129 | sunnyosun | 2022-08-04 |
| "bioreader" to |
| "bioreadout" |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 128 | falexwolf | 2022-08-03 |
| lndb_setup 0.5.0 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 127 | falexwolf | 2022-08-03 |
| "lnschema_core" |
| 0.3.0 |
| --- | --- | --- | --- | --- |
| 🚚 Renamed | 126 | sunnyosun | 2022-08-03 |
| "meta.annotate" to |
| "db.link" |
| --- | --- | --- | --- | --- |
| 👷 Cleaner CI | 125 | falexwolf | 2022-08-02 | 0.2.1 |
| environment |
| switching |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 123 | falexwolf | 2022-08-02 | 0.2.0 |
| "lndb_setup" 0.4.2 |
| --- | --- | --- | --- | --- |
| 📝 Polish the | 122 | falexwolf | 2022-08-02 |
| "introspect" |
| tutorial |
| --- | --- | --- | --- | --- |
| 📝 Polish the 4 key | 121 | falexwolf | 2022-08-02 |
| tutorial pages |
| --- | --- | --- | --- | --- |
| 📝 Polish "get- | 119 | falexwolf | 2022-08-01 |
| started" & "select- |
| data" |
| --- | --- | --- | --- | --- |
| ✨ Allow ingesting | 118 | sunnyosun | 2022-08-01 |
| fcs files and |
| selecting genes |
| --- | --- | --- | --- | --- |
| 📝 Prettify user | 117 | falexwolf | 2022-08-01 |
| mentions in guide & |
| faq |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 116 | falexwolf | 2022-08-01 |
| "lndb_setup" 0.4.0 |
| --- | --- | --- | --- | --- |
| 🎨 Overhauled guide, | 115 | sunnyosun | 2022-08-01 |
| renamed "load" to |
| "select.table_as_df" |
| --- | --- | --- | --- | --- |
| 🩹 Some fixes of | 114 | falexwolf | 2022-07-31 |
| ingesting in-memory |
| dobjects and an |
| analysis draft |
| --- | --- | --- | --- | --- |
| ✨ Select and update | 113 | sunnyosun | 2022-07-31 |
| metadata |
| --- | --- | --- | --- | --- |
| 📝 Add a problem | 112 | falexwolf | 2022-07-31 |
| statement |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 111 | falexwolf | 2022-07-31 |
| "lamindb-schema" |
| 0.3.1 |
| --- | --- | --- | --- | --- |
| 🚧 Annotate features | 110 | sunnyosun | 2022-07-31 |
| during ingestion |
| --- | --- | --- | --- | --- |
| 📝 Re-write landing | 109 | falexwolf | 2022-07-30 |
| page |
| --- | --- | --- | --- | --- |
| 📝 Improve "get- | 108 | falexwolf | 2022-07-30 |
| started" and |
| "collaborate" guide |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 106 | falexwolf | 2022-07-29 |
| "lnschema_core" |
| 0.2.0 |
| --- | --- | --- | --- | --- |
| 🚚 Move out | 105 | falexwolf | 2022-07-29 |
| "lndb_hub" |
| --- | --- | --- | --- | --- |
| ♻️ Refactor sharing | 104 | falexwolf | 2022-07-29 |
| on the hub |
| --- | --- | --- | --- | --- |
| ✨ Enable sharing | 69 | fredericenard | 2022-07-29 |
| dobjects & instances |
| in the hub |
| --- | --- | --- | --- | --- |
| 🔥 Moved readout | 103 | sunnyosun | 2022-07-28 |
| vocab to bioreader |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade | 102 | falexwolf | 2022-07-26 |
| "lndb_setup" to |
| 0.3.0 |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to lndb- | 101 | falexwolf | 2022-07-25 |
| cli 0.2.0 |
| --- | --- | --- | --- | --- |
| 🚚 Account for table | 99 | falexwolf | 2022-07-25 |
| construction in |
| lndb-cli |
| --- | --- | --- | --- | --- |
| 🚚 Move CLI code to | 98 | falexwolf | 2022-07-24 |
| "lndb-cli" |
| --- | --- | --- | --- | --- |
| 🍱 Adapted to | 97 | sunnyosun | 2022-07-24 |
| "lnschema-biology" |
| "0.1.1" |
| --- | --- | --- | --- | --- |
| 🚸 Let the CLI have | 96 | falexwolf | 2022-07-24 |
| actual subcommands |
| --- | --- | --- | --- | --- |
| 👷 Add time out to | 93 | Koncopd | 2022-07-23 |
| GitHub Actions |
| --- | --- | --- | --- | --- |
| 🔥 Switched logger | 92 | sunnyosun | 2022-07-23 |
| to use lamin-utils |
| --- | --- | --- | --- | --- |
| ✨  Annotate biometa | 90 | sunnyosun | 2022-07-23 |
| when annotating |
| genes |
| --- | --- | --- | --- | --- |
| 🔼 Upgrade to schema | 89 | falexwolf | 2022-07-23 |
| 0.2.1 |
| --- | --- | --- | --- | --- |
| 🎨 Use modular | 88 | falexwolf | 2022-07-22 |
| schema structure |
| --- | --- | --- | --- | --- |
| 🚚 Move db API from | 87 | falexwolf | 2022-07-22 |
| admin to dev |
| --- | --- | --- | --- | --- |
| ✨ Enable annotating | 81 | sunnyosun | 2022-07-22 |
| features of dobjects |
| --- | --- | --- | --- | --- |
| 🚸 Offer manual way | 86 | falexwolf | 2022-07-22 |
| of completing a |
| migration |
| --- | --- | --- | --- | --- |
| 🏗️ Separate settings | 83 | fredericenard | 2022-07-22 |
| into user vs. |
| instance and one |
| file per instance |
| --- | --- | --- | --- | --- |
| 🐛 Fix loading of | 85 | falexwolf | 2022-07-21 | 0.1.2 |
| multi-index and non- |
| id tables |
| --- | --- | --- | --- | --- |
| 🚚 Rename table | 84 | falexwolf | 2022-07-21 |
| "interface" to |
| "jupynb": migrate to |
| schema v0.1.1 |
| --- | --- | --- | --- | --- |
| 🚚 Move version | 82 | falexwolf | 2022-07-20 |
| check into correct |
| **init** |
| --- | --- | --- | --- | --- |
| ⬆️ Fix the | 80 | falexwolf | 2022-07-19 | 0.1.1 |
| publishing call by |
| upgrading to |
| nbproject 0.4.3 |
| --- | --- | --- | --- | --- |
| ✨ Add | 79 | falexwolf | 2022-07-19 | 0.1.0 |
| "schema_version" |
| check |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 77 | falexwolf | 2022-07-17 |
| "lamindb.model" to |
| "laminln.schema" |
| --- | --- | --- | --- | --- |
| 🚚 Migrate schema | 76 | falexwolf | 2022-07-17 |
| out to "lamindb- |
| schema" |
| --- | --- | --- | --- | --- |
| ✨ Version dobjects | 75 | falexwolf | 2022-07-16 |
| and interfaces |
| --- | --- | --- | --- | --- |
| 💄 Pretty logging | 74 | sunnyosun | 2022-07-15 |
| --- | --- | --- | --- | --- |
| ✨ Add "ingest.add" | 73 | sunnyosun | 2022-07-14 |
| and "ingest.commit" |
| --- | --- | --- | --- | --- |
| 📝 Add an example of | 72 | sunnyosun | 2022-07-12 |
| ingesting images |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 71 | falexwolf | 2022-07-12 |
| nbproject 0.2.1 |
| --- | --- | --- | --- | --- |
| 🐛 Fix bug | 70 | falexwolf | 2022-07-12 |
| --- | --- | --- | --- | --- |
| 📝 Added example | 66 | sunnyosun | 2022-07-11 |
| notebook for |
| ingesting fcs files |
| --- | --- | --- | --- | --- |
| ⬆️ Migrate to | 68 | falexwolf | 2022-07-11 |
| nbproject 0.2.0 |
| --- | --- | --- | --- | --- |
| 🚸 Auto-check | 65 | falexwolf | 2022-07-09 | 0.0.9 |
| integrity upon data |
| ingestion only on |
| Jupyter Lab |
| --- | --- | --- | --- | --- |
| 🚚 Rename"lndb | 64 | falexwolf | 2022-07-09 |
| config" to "lndb |
| init" and rewrite |
| get-started |
| --- | --- | --- | --- | --- |
| 🚸 Raise error upon | 63 | falexwolf | 2022-07-09 |
| multiple sign ups |
| with same |
| unconfirmed email |
| --- | --- | --- | --- | --- |
| ✨ Allow sharing | 62 | falexwolf | 2022-07-08 |
| instances with other |
| users |
| --- | --- | --- | --- | --- |
| 🏗️ Improve | 61 | falexwolf | 2022-07-08 |
| configuration logic, |
| flow, logging & |
| testing |
| --- | --- | --- | --- | --- |
| ✨ Populate user | 60 | fredericenard | 2022-07-07 |
| metadata at sign up |
| --- | --- | --- | --- | --- |
| ✨ Unique user | 59 | falexwolf | 2022-07-06 |
| identity across |
| instances |
| --- | --- | --- | --- | --- |
| 🚧 Enable storing | 58 | falexwolf | 2022-07-04 | 0.0.8 |
| sqlite on S3 |
| --- | --- | --- | --- | --- |
| 🚚 Rename table | 57 | falexwolf | 2022-07-04 |
| "file" to "dobject" |
| --- | --- | --- | --- | --- |
| 🚚 Rename CLI from | 56 | falexwolf | 2022-07-04 |
| "lamindb" to "lndb" |
| --- | --- | --- | --- | --- |
| ✨ Add | 55 | falexwolf | 2022-07-03 | 0.0.7 |
| "instance_name" to |
| settings and |
| "instance" to setup |
| --- | --- | --- | --- | --- |
| ♻️ Refactor file | 54 | falexwolf | 2022-07-03 | 0.0.6 |
| storage |
| --- | --- | --- | --- | --- |
| ♻️ Refactor settings | 52 | falexwolf | 2022-07-02 | 0.0.5 |
| --- | --- | --- | --- | --- |
| 👷 Switch to | 51 | falexwolf | 2022-07-01 |
| nbproject tests & |
| clean up logging |
| --- | --- | --- | --- | --- |
| ✨ Use nbproject | 50 | falexwolf | 2022-07-01 |
| publish |
| functionality |
| --- | --- | --- | --- | --- |
| 🚚 Rename tutorial | 49 | falexwolf | 2022-06-29 |
| to guide |
| --- | --- | --- | --- | --- |
| 👷 Measure coverage | 48 | sunnyosun | 2022-06-26 |
| --- | --- | --- | --- | --- |
| 🏗️ Settings: From | 46 | falexwolf | 2022-06-25 |
| pydantic BaseModel |
| to custom class |
| --- | --- | --- | --- | --- |
| 🏗️ Complete refactor | 45 | falexwolf | 2022-06-25 |
| of setup, settings & |
| storage management |
| --- | --- | --- | --- | --- |
| ⬆️ Upgrade to | 43 | falexwolf | 2022-06-23 |
| nbproject 0.1a3 |
| --- | --- | --- | --- | --- |
| 📝 One-page layout | 42 | falexwolf | 2022-06-14 |
| for data models |
| --- | --- | --- | --- | --- |
| ♻️ More explicit | 41 | falexwolf | 2022-06-14 |
| "_id" name for such |
| fields |
| --- | --- | --- | --- | --- |
| ♻️ Migrate from sql | 40 | falexwolf | 2022-06-14 |
| to sqm everywhere |
| --- | --- | --- | --- | --- |
| ✨ Implement data | 39 | falexwolf | 2022-06-12 | 0.0.4 |
| access log |
| "track.do" |
| --- | --- | --- | --- | --- |
| 🏗️ Re-organize API | 38 | falexwolf | 2022-06-12 |
| --- | --- | --- | --- | --- |
| 🏗️ Set up db with | 37 | falexwolf | 2022-06-11 |
| sqlmodel, test int |
| ids |
| --- | --- | --- | --- | --- |
| 🏗️ Re-designed | 36 | falexwolf | 2022-06-10 |
| entire API |
| --- | --- | --- | --- | --- |
| 🔥 Remove notion | 35 | falexwolf | 2022-06-10 |
| integration up to |
| CLI |
| --- | --- | --- | --- | --- |
| 📝 Rename from | 34 | falexwolf | 2022-06-10 | 0.0.3 |
| lamindb to LaminDB & |
| rewrite the landing |
| page |
| --- | --- | --- | --- | --- |
| 🏗️ Introduce field | 31 | falexwolf | 2022-06-09 |
| "interface.type" |
| --- | --- | --- | --- | --- |
| 🚚  Rename global | 30 | falexwolf | 2022-06-09 |
| "source" table to |
| "interface" |
| --- | --- | --- | --- | --- |
| ✨ Track python | 27 | falexwolf | 2022-06-09 |
| package dependencies |
| in |
| "source.dependency" |
| --- | --- | --- | --- | --- |
| ✨ Track title of | 26 | falexwolf | 2022-06-09 |
| ingesting notebook |
| in "source.name" |
| --- | --- | --- | --- | --- |
| 🐛 Fix user & | 24 | falexwolf | 2022-06-08 |
| notebook ingestion, |
| add another test |
| dataset |
| --- | --- | --- | --- | --- |
| ✅ Fix pandas load, | 23 | falexwolf |
| add tests |
| --- | --- | --- | --- | --- |
| ✨ Add | 22 | falexwolf |
| introspection: |
| "db.diagram()", |
| "db.entities()", |
| "db.load()" |
| --- | --- | --- | --- | --- |
| ✨ Add entity "user" | 21 | falexwolf |
| --- | --- | --- | --- | --- |
| 🚸 Auto-create local | 20 | falexwolf |
| storage dir & cache |
| dir |
| --- | --- | --- | --- | --- |
| ✅ Add a test for db | 18 | falexwolf |
| creation & file |
| ingestion |
| --- | --- | --- | --- | --- |
| 🏗️ Name the database | 17 | falexwolf |
| file like the |
| storage root |
| directory |
| --- | --- | --- | --- | --- |
| ♻️ Refactor | 16 | falexwolf |
| "lndb.db" |
| --- | --- | --- | --- | --- |
| 🔧 Refactor | 15 | falexwolf |
| "lndb.settings" |
| --- | --- | --- | --- | --- |
| 🔥 Remove versioneer | 14 | falexwolf |
| --- | --- | --- | --- | --- |
| 👷 Track changes as | 13 | falexwolf | 2022-06-07 |
| in "cookiecutter-py" |
| 0.3.0 |
| --- | --- | --- | --- | --- |
| 🏗️ Basic file | 9 | falexwolf | 2022-06-06 |
| ingestion from a |
| notebook |
| --- | --- | --- | --- | --- |
| 🔥 Remove "sqlmodel" | 8 | falexwolf | 2022-06-04 |
| dependency |
| --- | --- | --- | --- | --- |
| 📄 Change format of | 7 | falexwolf | 2022-05-23 |
| license file |
| --- | --- | --- | --- | --- |
| 📝 Fix faq link | 6 | falexwolf | 2022-05-26 |
| --- | --- | --- | --- | --- |
| ♻️ Update to | 5 | falexwolf | 2022-05-23 |
| cookiecutter 0.2.0 |
| --- | --- | --- | --- | --- |
| 💄 More narrow | 4 | falexwolf | 2022-05-11 |
| sidebar |
| --- | --- | --- | --- | --- |
| 💄 Switch "faq" and | 3 | falexwolf | 2022-05-11 |
| "api" |
| --- | --- | --- | --- | --- |
| 📝 Polish the | 2 | falexwolf | 2022-05-11 |
| documentation |
| --- | --- | --- | --- | --- |
| 🚚 Migrated from | 1 | falexwolf |
| "lamin" repository |
| --- | --- | --- | --- | --- |

# "lnschema-core"

Core schema module for lamindb.

GitHub: github.com/laminlabs/lnschema-core

| --- | --- | --- | --- | --- |
| Name | PR | Developer | Date | Version |
| ====================== | ====================== | ====================== | ====================== | ====================== |
| 🐛 Fixed bug in | 84 | sunnyosun | 2022-12-14 | 0.23.2 |
| DObject not |
| autogenerate id |
| --- | --- | --- | --- | --- |
| 📝 Update docstring | 83 | falexwolf | 2022-12-12 |
| --- | --- | --- | --- | --- |
| 🚚 Rename input to | 81 | falexwolf | 2022-12-09 | 0.23.1 |
| inputs |
| --- | --- | --- | --- | --- |
| 🐛 Avoid double | 80 | falexwolf | 2022-12-09 | 0.23.0 |
| construction |
| --- | --- | --- | --- | --- |
| 🐛 Fix privates | 79 | falexwolf | 2022-12-09 | 0.22.4 |
| --- | --- | --- | --- | --- |
| 🐛 Fix size | 78 | falexwolf | 2022-12-09 | 0.22.3 |
| --- | --- | --- | --- | --- |
| ✨ Combine "record" | 77 | sunnyosun | 2022-12-09 | 0.22.2 |
| with "DObject" |
| --- | --- | --- | --- | --- |
| 🥅 Fully module- | 75 | falexwolf | 2022-12-08 |
| qualified path for |
| "Pipeline" |
| --- | --- | --- | --- | --- |
| 💄 Prettify noxfile | 74 | falexwolf | 2022-12-08 |
| --- | --- | --- | --- | --- |
| ♻️ Clean up | 73 | falexwolf | 2022-12-08 | 0.22.1 |
| migration tests |
| --- | --- | --- | --- | --- |
| ✅ Migration testing | 72 | falexwolf | 2022-12-07 |
| primitives on |
| postgres |
| --- | --- | --- | --- | --- |
| 🚚 Rename "Jupynb" | 69 | falexwolf | 2022-12-07 | 0.22.0 |
| to "Notebook" and |
| add relationships |
| --- | --- | --- | --- | --- |
| 🎨 Reorganize, more | 68 | falexwolf | 2022-12-07 |
| tests, change "size" |
| to BigInt |
| --- | --- | --- | --- | --- |
| ✨ "add_relationshi | 67 | falexwolf | 2022-12-06 |
| p_keys" function |
| --- | --- | --- | --- | --- |
| 🐛 Fix import | 66 | falexwolf | 2022-12-05 | 0.21.2 |
| --- | --- | --- | --- | --- |
| ✨ Bypass load | 65 | fredericenard | 2022-12-02 |
| settings |
| --- | --- | --- | --- | --- |
| 🎨 Prettify API & | 64 | falexwolf | 2022-11-28 |
| docs |
| --- | --- | --- | --- | --- |
| 🍱 Add tested | 63 | falexwolf | 2022-11-28 | 0.21.1 |
| migration |
| --- | --- | --- | --- | --- |
| 🚚 Move storage to | 62 | fredericenard | 2022-11-24 | 0.21.0 |
| public |
| --- | --- | --- | --- | --- |
| 🚚 Rename "checksum" | 60 | falexwolf | 2022-11-18 | 0.20.0 |
| to "hash" |
| --- | --- | --- | --- | --- |
| 🏗️ Add "Features" | 59 | falexwolf | 2022-11-17 | 0.19.0 |
| table |
| --- | --- | --- | --- | --- |
| ✨ Add "path" | 58 | falexwolf | 2022-11-14 | 0.18.0 |
| property to |
| "DObject" |
| --- | --- | --- | --- | --- |
| 💚 Fix migration | 57 | falexwolf | 2022-11-12 | 0.17.1 |
| --- | --- | --- | --- | --- |
| 🏗️ Aggregate "Run" | 56 | falexwolf | 2022-11-11 | 0.17.0 |
| and "DTransform" |
| --- | --- | --- | --- | --- |
| 🍱 Add migration for | 55 | falexwolf | 2022-11-10 | 0.16.1 |
| postgres |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 54 | falexwolf | 2022-11-10 | 0.16.0 |
| "PipeineRun" to |
| "Run" |
| --- | --- | --- | --- | --- |
| 🐛 Fix prefix II | 53 | falexwolf | 2022-11-03 | 0.15.2 |
| --- | --- | --- | --- | --- |
| 🐛 Fix prefix | 52 | falexwolf | 2022-11-03 | 0.15.1 |
| --- | --- | --- | --- | --- |
| 🎨 Camel case class | 51 | falexwolf | 2022-11-02 | 0.15.0 |
| names |
| --- | --- | --- | --- | --- |
| 🍱 Migration and | 50 | falexwolf | 2022-11-02 |
| fixes for postgres |
| --- | --- | --- | --- | --- |
| ✨ Schema modules on | 49 | falexwolf | 2022-11-01 |
| SQL level |
| --- | --- | --- | --- | --- |
| 🧑‍💻 Added naming | 47 | sunnyosun | 2022-10-20 |
| convention |
| --- | --- | --- | --- | --- |
| ✨ Added "dset" and | 46 | sunnyosun | 2022-10-19 | 0.14.0 |
| "project" |
| --- | --- | --- | --- | --- |
| 🚚 Rename query to | 45 | falexwolf | 2022-10-12 | 0.13.0 |
| select |
| --- | --- | --- | --- | --- |
| 🐛 Add migration | - | falexwolf | 2022-10-11 | 0.12.1 |
| version |
| --- | --- | --- | --- | --- |
| ✨ Add "checksum" | 43 | fredericenard | 2022-10-11 | 0.12.0 |
| column |
| --- | --- | --- | --- | --- |
| 🚚 Add "name" column | 42 | falexwolf | 2022-10-10 | 0.11.0 |
| to user |
| --- | --- | --- | --- | --- |
| 🩹 Fix migration | 41 | falexwolf | 2022-10-07 | 0.10.1 |
| script |
| --- | --- | --- | --- | --- |
| 🚸 Auto-populated | 40 | falexwolf | 2022-10-07 | 0.10.0 |
| CreatedBy |
| --- | --- | --- | --- | --- |
| 🏗️ Remove version | 39 | falexwolf | 2022-09-30 | 0.9.0 |
| column from dobject |
| --- | --- | --- | --- | --- |
| 👷 Fix CI setup | 37 | falexwolf | 2022-09-26 |
| --- | --- | --- | --- | --- |
| 🚸 Fix type | 35 | falexwolf | 2022-09-26 | 0.8.1 |
| annotations of |
| primary keys and add |
| docstrings |
| everywhere |
| --- | --- | --- | --- | --- |
| ✨ Add "size" field | 32 | falexwolf | 2022-09-25 | 0.8.0 |
| to "dobject" |
| --- | --- | --- | --- | --- |
| 🍱 Add migration | 34 | falexwolf | 2022-09-24 | 0.7.3 |
| script |
| --- | --- | --- | --- | --- |
| 🩹 Fix type | 33 | falexwolf | 2022-09-24 |
| annotation of |
| timestamps |
| --- | --- | --- | --- | --- |
| 💄 Add noqa to | 31 | falexwolf | 2022-09-23 |
| script mako & |
| simpler unique |
| constraint |
| --- | --- | --- | --- | --- |
| ✨ Add "insert" to | 30 | sunnyosun | 2022-09-21 |
| "type.usage" |
| --- | --- | --- | --- | --- |
| 🚚 Move migrations | 29 | falexwolf | 2022-09-20 | 0.7.2 |
| to package |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 28 | falexwolf | 2022-09-18 | 0.7.1 |
| "file_suffix" to |
| "suffix" |
| --- | --- | --- | --- | --- |
| ✨ Rename time | 27 | falexwolf | 2022-09-18 | 0.7.0 |
| stamps and make them |
| server default |
| --- | --- | --- | --- | --- |
| 🚚 Move testdb into | 26 | falexwolf | 2022-09-18 |
| tests dir |
| --- | --- | --- | --- | --- |
| ✨ Enable | 25 | falexwolf | 2022-09-15 | 0.6.0 |
| independent |
| migrations across |
| modules |
| --- | --- | --- | --- | --- |
| 🩹 Add timestamps to | 24 | falexwolf | 2022-08-26 | 0.5.1 |
| "pipeline" |
| --- | --- | --- | --- | --- |
| 🐛 Re-export | 23 | falexwolf | 2022-08-26 |
| "pipeline" at root |
| level |
| --- | --- | --- | --- | --- |
| ✨ Add table | 22 | falexwolf | 2022-08-26 | 0.5.0 |
| "pipeline" |
| --- | --- | --- | --- | --- |
| ♻️ Refactor id, | 21 | falexwolf | 2022-08-24 |
| create "type" |
| submodule |
| --- | --- | --- | --- | --- |
| 🚸 Change instance & | 20 | falexwolf | 2022-08-24 |
| storage id to 10 |
| char, overhaul ID |
| module |
| --- | --- | --- | --- | --- |
| Use id to reference | 19 | fredericenard | 2022-08-23 | 0.4.1 |
| storage |
| --- | --- | --- | --- | --- |
| 🚚 Add migration for | 16 | falexwolf | 2022-08-22 | 0.4.0 |
| v0.4.0 |
| --- | --- | --- | --- | --- |
| 🏗️ Add indexes and | 15 | falexwolf | 2022-08-22 |
| remove |
| "dtransform_out" |
| --- | --- | --- | --- | --- |
| 🏗️ Track cloud | 14 | fredericenard | 2022-08-20 | 0.3.3 |
| workspace location |
| --- | --- | --- | --- | --- |
| 🚚 Rename package | 10 | falexwolf | 2022-08-19 | 0.3.2 |
| from "lndb-schema- |
| core" to "lnschema- |
| core" |
| --- | --- | --- | --- | --- |
| 🗃️ Rename "pipeline" | 9 | bpenteado | 2022-08-18 | 0.3.1 |
| to "pipeline_run" |
| and remove "v" |
| --- | --- | --- | --- | --- |
| 🚚 Add migration | 8 | falexwolf | 2022-08-08 |
| from v0.1.1 to |
| v0.3.0 |
| --- | --- | --- | --- | --- |
| 🚚 Rename "track_do" | 6 | falexwolf | 2022-08-03 | 0.3.0 |
| to "usage" |
| --- | --- | --- | --- | --- |
| 🏗️ Attach id "yvzi" | 5 | falexwolf | 2022-08-03 |
| and add version |
| table "version_yvzi" |
| --- | --- | --- | --- | --- |
| 🗃️ Add "user.handle" | 4 | falexwolf | 2022-08-01 | 0.2.1 |
| --- | --- | --- | --- | --- |
| 🏗️ Schema v0.2.0 | 3 | falexwolf | 2022-07-29 | 0.2.0 |
| with "dtransform" |
| --- | --- | --- | --- | --- |
| 🚚 Add migrations | 2 | falexwolf | 2022-07-28 |
| from "lamindb- |
| schema" |
| --- | --- | --- | --- | --- |
| 🚚 Move code from | 1 | falexwolf | 2022-07-23 | 0.1.0 |
| "lamindb-schema" |
| --- | --- | --- | --- | --- |

# "lnschema-bionty"

Bionty schema module for lamindb.

GitHub: github.com/laminlabs/lnschema-bionty

| --- | --- | --- | --- | --- |
| Name | PR | Developer | Date | Version |
| ====================== | ====================== | ====================== | ====================== | ====================== |
| 🧪 Added test for | 37 | sunnyosun | 2022-12-09 |
| ontology |
| autopopulate |
| --- | --- | --- | --- | --- |
| ✅ Add migrations | 36 | falexwolf | 2022-12-08 |
| test |
| --- | --- | --- | --- | --- |
| ✨ Added | 35 | sunnyosun | 2022-12-07 | 0.6.2 |
| bionty_version table |
| --- | --- | --- | --- | --- |
| 🎨 Updated | 34 | sunnyosun | 2022-12-05 |
| bionty_versions |
| --- | --- | --- | --- | --- |
| ✨ Added | 33 | sunnyosun | 2022-11-18 | 0.6.1 |
| "bionty_versions" |
| table |
| --- | --- | --- | --- | --- |
| 🏗️ Introduce | 32 | falexwolf | 2022-11-17 | 0.6.0 |
| relationships, move |
| Features table to |
| core |
| --- | --- | --- | --- | --- |
| ⚡ Implemented | 31 | sunnyosun | 2022-11-11 | 0.5.4 |
| knowledge as a |
| decorator |
| --- | --- | --- | --- | --- |
| ✨ Added populator | 30 | sunnyosun | 2022-11-11 |
| for ontologies |
| --- | --- | --- | --- | --- |
| ♻️ Refactor | 29 | falexwolf | 2022-11-06 |
| knowledge population |
| --- | --- | --- | --- | --- |
| 🐛 Fixed postgres | 28 | sunnyosun | 2022-11-06 | 0.5.3 |
| migration script |
| --- | --- | --- | --- | --- |
| ✨ Use bionty to | 27 | sunnyosun | 2022-11-06 | 0.5.2 |
| populate species |
| --- | --- | --- | --- | --- |
| 🐛 Fix prefix | 26 | falexwolf | 2022-11-03 | 0.5.1 |
| --- | --- | --- | --- | --- |
| 🎨 Modularize and | 24 | falexwolf | 2022-11-03 | 0.5.0 |
| capitalize |
| --- | --- | --- | --- | --- |
| 🎨 Updated cell | 23 | sunnyosun | 2022-10-25 | 0.4.5 |
| marker id gen |
| --- | --- | --- | --- | --- |
| ✏️ Updated species | 22 | sunnyosun | 2022-10-24 | 0.4.4 |
| id to be 3 chars |
| --- | --- | --- | --- | --- |
| 🧑‍💻 Added naming | 20 | sunnyosun | 2022-10-20 |
| convention |
| --- | --- | --- | --- | --- |
| 🩹 Fix type | 19 | falexwolf | 2022-09-29 | 0.4.3 |
| annotations of |
| primary keys |
| --- | --- | --- | --- | --- |
| ✏️ Changed ids to | 18 | sunnyosun | 2022-09-29 | 0.4.2 |
| str |
| --- | --- | --- | --- | --- |
| 🍱 Added | 17 | sunnyosun | 2022-09-27 | 0.4.1 |
| "description" and |
| "version" columns to |
| the gene table |
| --- | --- | --- | --- | --- |
| 🚚 Update primary | 16 | falexwolf | 2022-09-22 | 0.4.0 |
| keys to universal |
| ids |
| --- | --- | --- | --- | --- |
| 🚚 Rename column in | 15 | falexwolf | 2022-09-22 | 0.3.1 |
| version table, add |
| testdb, and |
| migration script |
| --- | --- | --- | --- | --- |
| ✨ Add migrations | 14 | falexwolf | 2022-09-22 | 0.3.0 |
| infra |
| --- | --- | --- | --- | --- |
| 🩹 Added unique | 13 | sunnyosun | 2022-09-22 |
| constraints |
| --- | --- | --- | --- | --- |
| 🐛 Fixed API ref | 12 | sunnyosun | 2022-09-06 | 0.2.4 |
| --- | --- | --- | --- | --- |
| 🎨 Import additional | 11 | sunnyosun | 2022-08-28 | 0.2.3 |
| modules, species -> |
| species_id |
| --- | --- | --- | --- | --- |
| 🚚 Rename | 10 | sunnyosun | 2022-08-28 | 0.2.2 |
| gene_symbol to |
| symbol, protein_name |
| to name |
| --- | --- | --- | --- | --- |
| ⬆️ Update schema to | 9 | sunnyosun | 2022-08-28 | 0.2.1 |
| match bionty 0.2.0 |
| --- | --- | --- | --- | --- |
| 🚚 Rename "lndb- | 8 | falexwolf | 2022-08-19 | 0.2.0 |
| schema-bionty" to |
| "lnschema-bionty" |
| --- | --- | --- | --- | --- |
| 🔧 Add schema module | 7 | falexwolf | 2022-08-18 |
| id |
| --- | --- | --- | --- | --- |
| 🍱 Updated the gene | 6 | sunnyosun | 2022-08-18 | 0.1.4 |
| table to match new |
| ensembl table |
| --- | --- | --- | --- | --- |
| 🎨 Changed type of | 5 | sunnyosun | 2022-08-15 | 0.1.3 |
| "species" and |
| "entrez_gene_id" in |
| "gene" table to |
| "int" |
| --- | --- | --- | --- | --- |
| 🚚 Move "biolab" to | 4 | falexwolf | 2022-07-31 |
| "lnschema-wetlab" |
| --- | --- | --- | --- | --- |
| ✨ Introduced | 2 | sunnyosun | 2022-07-31 | 0.1.2 |
| featureset to |
| replace geneset and |
| proteinset |
| --- | --- | --- | --- | --- |
| 🎨 Changed | commit | sunnyosun | 2022-07-23 | 0.1.1 |
| "resolution" to |
| "platform" in |
| "readout_type" |
| --- | --- | --- | --- | --- |
| 🚚 Move code from | 1 | falexwolf | 2022-07-23 | 0.1.0 |
| "lamindb-schema" |
| --- | --- | --- | --- | --- |